GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000963-TA|BGIBMGA000963-PA|IPR006210|EGF,
IPR013032|EGF-like region, IPR008929|Chondroitin AC/alginate lyase,
IPR013111|EGF, extracellular
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    29   2.8  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    27   6.4  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    27   6.4  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   6.4  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   8.5  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    27   8.5  

>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 488 IQATIVHKLSVLWTAVLMESALKVYADATKD 518
           +  TI H LSV W+A ++E  L  + D T D
Sbjct: 115 VSKTIFHVLSVNWSARVIEQTLLHHTDLTAD 145


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 535 STVNARTELVFALKAGTVDIVLCRVVQMDVHVTVNVCWKMASTAAP---VLKELFTSLLC 591
           +T   + E +   K  T   VLCR    +  + +N    +     P    L++LF  L C
Sbjct: 221 TTKKQKYEKIMEKKISTPTEVLCRGFPQEFSIYLNYTRSLRFDDKPDYAYLRKLFRDLFC 280

Query: 592 KKSY 595
           ++SY
Sbjct: 281 RQSY 284


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 288 GRWFISLYNDELQPHHVEMIVSEAEGVTNSCP 319
           G WF S   D+L P    +     EG  NSCP
Sbjct: 182 GTWFFSR-GDKLYPCEENLATQVEEGYLNSCP 212


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/24 (41%), Positives = 19/24 (79%)

Query: 75  LAYFIALSSIKSNIDNSNCILVQD 98
           L+Y++ LSS+K+ I++S C+  +D
Sbjct: 238 LSYYLYLSSMKAYINSSGCLWYED 261


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 571 CWKMASTAAPVLKELFTSLLCKKSYIQHRYIISQWLNFEDG 611
           C K+     P+L++ F  L    SY++     + W N  +G
Sbjct: 717 CLKICERRLPLLQQSFFCLAATVSYVKQSEQAANWCNIGEG 757


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 257 TINPYHKWNHTINKRSTDMRVNVSILQYLDTGRWFISLYNDELQPHHVEMIVSEAEGVTN 316
           ++N  HKW+ T NK   D+R+      ++  G  F S++ + L   H  M+   A G   
Sbjct: 133 SLNREHKWDFTPNK---DLRIG----DHVSGGDVFGSVFENSLFNDHKIMLPPRARGTVT 185

Query: 317 SCPDDCSNH 325
              +  S H
Sbjct: 186 YIAEAGSYH 194


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.134    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,543
Number of Sequences: 5004
Number of extensions: 102090
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 6
length of query: 679
length of database: 2,362,478
effective HSP length: 78
effective length of query: 601
effective length of database: 1,972,166
effective search space: 1185271766
effective search space used: 1185271766
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)