GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000963-TA|BGIBMGA000963-PA|IPR006210|EGF,
IPR013032|EGF-like region, IPR008929|Chondroitin AC/alginate lyase,
IPR013111|EGF, extracellular
         (679 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   3.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   6.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   8.2  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           23   8.2  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 490 ATIVHKLSVLWTAVLMESALKVYADATKDGLEQFV 524
           + +V    + W    ++  L VY D+T D + Q+V
Sbjct: 263 SAVVITFFICWAPFHVQRLLYVYEDSTYDDINQWV 297


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 163 EFDELHSATIPAYQFWSSEFRNKQPAYVSLNFTVP 197
           EFD ++S  + +Y+ W  +        V ++  +P
Sbjct: 101 EFDSINSIRVKSYEIWVPDIVMHSVTSVGIDLEMP 135


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 262 HKWNHTINKRSTDMRVNVSILQYLD 286
           ++WNHT++    D R    +  + D
Sbjct: 13  YQWNHTVSSGERDTRTEYYLPNWTD 37


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 292 ISLYNDELQPHHVEMIVSEAEGVTNSC 318
           +SLY D +QP     +V +      SC
Sbjct: 98  VSLYEDPIQPQQAASVVEKLGDYLVSC 124


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.134    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,070
Number of Sequences: 429
Number of extensions: 6336
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 679
length of database: 140,377
effective HSP length: 62
effective length of query: 617
effective length of database: 113,779
effective search space: 70201643
effective search space used: 70201643
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)