Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000963-TA|BGIBMGA000963-PA|IPR006210|EGF,
IPR013032|EGF-like region, IPR008929|Chondroitin AC/alginate lyase,
IPR013111|EGF, extracellular
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42620.1 68418.m05188 expressed protein 83 4e-16
At3g57630.2 68416.m06421 exostosin family protein contains Pfam ... 52 1e-06
At3g57630.1 68416.m06420 exostosin family protein contains Pfam ... 52 1e-06
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim... 36 0.088
At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identic... 33 0.82
At1g30900.1 68414.m03780 vacuolar sorting receptor, putative sim... 31 1.9
At1g34040.1 68414.m04220 alliinase family protein contains Pfam ... 31 3.3
At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC... 30 4.4
At1g32190.1 68414.m03959 expressed protein 30 4.4
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 29 7.7
At1g36230.1 68414.m04504 hypothetical protein 29 7.7
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 83.4 bits (197), Expect = 4e-16
Identities = 44/131 (33%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 295 YNDELQ-PHHVEMIVSEAEGVTNSCPDDCSNHGSCYLGKCECRDGYEGHDCSKSVCPVLC 353
+N EL P + E+ + V CP+ C+ +G C GKC C GY GHDC CP C
Sbjct: 579 FNGELICPAYHELCSTSVVSVLGQCPNSCNFNGDCVDGKCRCLLGYHGHDCRNRSCPNNC 638
Query: 354 SGHG-TYAGGICHCSEGWKGSECDIPAHDCEPADCSGRGQCIAGLCHCK-AGWKGPKCDE 411
+GHG G+C C G+ G +C D E G G C G+C + + + G C
Sbjct: 639 NGHGKCTTQGVCICENGFTGIDCSTAICD-EQCSLHG-GVCDNGVCEFRCSDYAGYTCQN 696
Query: 412 GEKNLLLNVLC 422
K + ++C
Sbjct: 697 SSKLVTSLLVC 707
>At3g57630.2 68416.m06421 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 791
Score = 52.0 bits (119), Expect = 1e-06
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 309 SEAEGVTNSCPDDCSNHGSCYLGKCECR-DGYEGHDCSKSV---CPVLCSGHGTYAGGIC 364
S +G N P+D +C+C+ D G C V C CSGHG GG C
Sbjct: 231 SSKQGWCNVDPEDAYAMKVKIKEECDCKYDCLWGRFCEIPVQCTCVNQCSGHGKCRGGFC 290
Query: 365 HCSEGWKGSECDIPA 379
C +GW G++C IP+
Sbjct: 291 QCDKGWFGTDCSIPS 305
Score = 41.9 bits (94), Expect = 0.001
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 364 CHCSEG--WKGSECDIPAHDCEPADCSGRGQCIAGLCHCKAGWKGPKC 409
C C W G C+IP CSG G+C G C C GW G C
Sbjct: 255 CDCKYDCLW-GRFCEIPVQCTCVNQCSGHGKCRGGFCQCDKGWFGTDC 301
>At3g57630.1 68416.m06420 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 793
Score = 52.0 bits (119), Expect = 1e-06
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 309 SEAEGVTNSCPDDCSNHGSCYLGKCECR-DGYEGHDCSKSV---CPVLCSGHGTYAGGIC 364
S +G N P+D +C+C+ D G C V C CSGHG GG C
Sbjct: 233 SSKQGWCNVDPEDAYAMKVKIKEECDCKYDCLWGRFCEIPVQCTCVNQCSGHGKCRGGFC 292
Query: 365 HCSEGWKGSECDIPA 379
C +GW G++C IP+
Sbjct: 293 QCDKGWFGTDCSIPS 307
Score = 41.9 bits (94), Expect = 0.001
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 364 CHCSEG--WKGSECDIPAHDCEPADCSGRGQCIAGLCHCKAGWKGPKC 409
C C W G C+IP CSG G+C G C C GW G C
Sbjct: 257 CDCKYDCLW-GRFCEIPVQCTCVNQCSGHGKCRGGFCQCDKGWFGTDC 303
Score = 35.5 bits (78), Expect = 0.12
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 19/80 (23%)
Query: 318 CPDDCSNHGSCY--LGKCECRDGYEGHDCSKSV---CPV--------------LCSGHGT 358
C DCS G C G C C G+ G DCS+ + C +CS H
Sbjct: 121 CMSDCSGQGVCNHEFGLCRCFHGFTGEDCSQKLRLDCNYEKTPEMPYGKWVVSICSRHCD 180
Query: 359 YAGGICHCSEGWKGSECDIP 378
+C C EG K +P
Sbjct: 181 TTRAMCFCGEGTKYPNRPVP 200
Score = 31.5 bits (68), Expect = 1.9
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 349 CPVLCSGHGT--YAGGICHCSEGWKGSECDIPAH-DC--EPADCSGRGQCIAGLC--HCK 401
C CSG G + G+C C G+ G +C DC E G+ + +C HC
Sbjct: 121 CMSDCSGQGVCNHEFGLCRCFHGFTGEDCSQKLRLDCNYEKTPEMPYGKWVVSICSRHCD 180
Query: 402 AGWKGPKCDEGEK 414
C EG K
Sbjct: 181 TTRAMCFCGEGTK 193
>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222; identical to vacuolar sorting
receptor-like protein (GI:2827665) [Arabidopsis
thaliana]
Length = 625
Score = 35.9 bits (79), Expect = 0.088
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 364 CHCSEGWKGSECDIPAHDCEPADCSGRGQCIAGLCHCKAGWKGPKCDEGEKNLLLN 419
C C EG++G + D +C R C C CK W G KC L +N
Sbjct: 499 CKCPEGFQGD--GLTCEDIN--ECKERSVCQCSGCRCKNSWGGYKCSCSGDRLYIN 550
Score = 29.9 bits (64), Expect = 5.8
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 310 EAEGVTNSCPDDCSNHGSCYLGKCECRDGYEGHDCSKS 347
+ +G+T ++C C C C++ + G+ CS S
Sbjct: 506 QGDGLTCEDINECKERSVCQCSGCRCKNSWGGYKCSCS 543
>At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identical
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
pathogen infection (PMID:10380805)
Length = 735
Score = 32.7 bits (71), Expect = 0.82
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 361 GGICHCSEGWKGSE-----CDIPAHDCEPADCSGRGQCI-AGLCHCKAGWKGPKCDEGEK 414
G IC C+EG+ G+ C ++C + R C C K G KC G +
Sbjct: 261 GYICRCNEGFDGNPYLSAGCQ-DVNECTTSSTIHRHNCSDPKTCRNKVGGFYCKCQSGYR 319
Query: 415 NLLLNVLCALKRIAWIRLVEVMVRVFAV---GVYAVQDGVALLVLSEMR 460
+ C K AW ++ V F V GV +Q + L +++R
Sbjct: 320 LDTTTMSCKRKEFAWTTILLVTTIGFLVILLGVACIQQRMKHLKDTKLR 368
>At1g30900.1 68414.m03780 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 631
Score = 31.5 bits (68), Expect = 1.9
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 332 KCECRDGYEGHDCSKSVCPVLCSGHGTYAGGICHCSEGWKGSECDIPAHDCEPAD-CSGR 390
+C G + K + CS T C C G+KG CE D C +
Sbjct: 469 RCSINQGGCWSETKKGLTFSACSNLETSG---CRCPPGFKGDGLK-----CEDIDECKEQ 520
Query: 391 GQCIAGLCHCKAGWKGPKC 409
C C+CK W G +C
Sbjct: 521 SACQCDGCNCKNKWGGFEC 539
>At1g34040.1 68414.m04220 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 457
Score = 30.7 bits (66), Expect = 3.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 345 SKSVCPVLCSGHG-TYAGGI--------CHCSEGWKGSECDIPAHDCEPADCS 388
+++ V CSGHG +Y G+ C C + + G +C + DC P D +
Sbjct: 42 AEAAASVSCSGHGRSYVDGLGVLDGHKPCECHDCYTGKDCSVLLKDC-PVDAN 93
Score = 30.3 bits (65), Expect = 4.4
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 11/41 (26%)
Query: 322 CSNHGSCY---LG------KCECRDGYEGHDCSKSV--CPV 351
CS HG Y LG CEC D Y G DCS + CPV
Sbjct: 50 CSGHGRSYVDGLGVLDGHKPCECHDCYTGKDCSVLLKDCPV 90
>At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC) /
sigma factor 3 (SIG3) identical to sigma factor SigC
[Arabidopsis thaliana] GI:5478585, sigma factor 3 (SIG3)
[Arabidopsis thaliana] GI:2353175, plastid RNA
polymerase sigma-subunit [Arabidopsis thaliana]
GI:2398853; contains Pfam profiles PF04545: Sigma-70,
region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
region 2
Length = 571
Score = 30.3 bits (65), Expect = 4.4
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 445 YAVQDGVALLVLSEMRVFNAASQPVRNVESMTSMRGDAFVIHFIQATIVHKLSVLWTAVL 504
YA + +A L ++ AA+Q ++ V S+ GD F F++ T + AV+
Sbjct: 435 YAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVM 494
Query: 505 MESALKVYADATKDGLE 521
+SA + D +GLE
Sbjct: 495 RQSARRDIHDLL-EGLE 510
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 30.3 bits (65), Expect = 4.4
Identities = 29/97 (29%), Positives = 36/97 (37%), Gaps = 15/97 (15%)
Query: 318 CPDDCS-NHGSCYLGKCECRDGYEGHDCSKSVCPVLCSGHGTYAGGICHCSEGWKGSECD 376
C CS C C C G C K CP L G ++ C C + S C
Sbjct: 301 CRPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTL---KGCFS---C-CKKPSCVSSCC 353
Query: 377 IPAHDCEPADCSGRGQCIAGLCHCKAGWKGPKCDEGE 413
P C + C G+ +C C C WK KC + E
Sbjct: 354 CPTFKC--SSCFGKPKC--PKCSC---WKCLKCPDTE 383
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 29.5 bits (63), Expect = 7.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 300 QPHHVEMIVSEAEGVTNSCPDDCSNHGS-CYLG-KCECRDGYEGHD 343
+PH++ + + ++ C C N G C L K E DGY G D
Sbjct: 229 RPHYISWVCPKELLLSKQCRTQCINQGRYCALDTKQEFEDGYNGKD 274
>At1g36230.1 68414.m04504 hypothetical protein
Length = 376
Score = 29.5 bits (63), Expect = 7.7
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 607 NFEDGMTDCSDSECCSRPECAEHIMCLASNDPVEVLLRKQPPSVTASFYQRVKFLI 662
++ DG+TD + E C + + + L + PV + + P V + Y ++K+L+
Sbjct: 135 SYNDGLTDRNVDEKCEGDKSVDRDVSLFEDAPV-FAIDRYPRDVRVNAYSKLKYLV 189
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.134 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,500
Number of Sequences: 28952
Number of extensions: 554962
Number of successful extensions: 1231
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 26
length of query: 679
length of database: 12,070,560
effective HSP length: 86
effective length of query: 593
effective length of database: 9,580,688
effective search space: 5681347984
effective search space used: 5681347984
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 63 (29.5 bits)
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