GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000962-TA|BGIBMGA000962-PA|undefined
         (99 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    27   0.70 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   2.8  

>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 57  ISDTDCIREISVNGSDYFRGTFSSHTGRI 85
           +S+T+ I +I  +G  YFRGT +S    I
Sbjct: 219 VSNTNYITKIDYSGRGYFRGTKNSFKATI 247


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 42  PRIFYFVICKDSACWISDTDCIREISVNGSDY 73
           P    F+ C +   +I   DC++E+S+N + +
Sbjct: 652 PCFLSFMQCHEPKKFICLGDCVKEVSLNATSW 683


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.140    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,848
Number of Sequences: 5004
Number of extensions: 13522
Number of successful extensions: 28
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 2
length of query: 99
length of database: 2,362,478
effective HSP length: 63
effective length of query: 36
effective length of database: 2,047,226
effective search space: 73700136
effective search space used: 73700136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 47 (23.0 bits)