GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000962-TA|BGIBMGA000962-PA|undefined
         (99 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0650 + 5500662-5501206,5502485-5502563,5503100-5503308,550...    28   1.4  
06_03_1016 - 26916978-26917244,26917499-26917642,26917708-269177...    26   4.3  
03_05_1052 - 29981142-29981546,29981637-29981707,29981887-299820...    26   5.6  
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539...    25   7.5  
11_01_0469 + 3638493-3641166,3641286-3641653                           25   7.5  

>12_01_0650 +
           5500662-5501206,5502485-5502563,5503100-5503308,
           5504396-5505146
          Length = 527

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 52  DSACWISDTDCIREISVNGSDYFRGT 77
           D A W+S ++C R   VNGS+  + T
Sbjct: 439 DLATWVSSSECARIAYVNGSERVKRT 464


>06_03_1016 -
           26916978-26917244,26917499-26917642,26917708-26917783,
           26917875-26918010,26918332-26918473,26920020-26920035,
           26920222-26920574
          Length = 377

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 58  SDTDCIREISVNGSDYFRGTFSSHTGRISRI 88
           SD+DC   +    S   RGT S+ T RI R+
Sbjct: 187 SDSDCDSLLEAERSPRLRGTKSTETKRIRRM 217


>03_05_1052 -
           29981142-29981546,29981637-29981707,29981887-29982022,
           29982263-29982727,29982872-29983179,29983601-29983976
          Length = 586

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 57  ISDTDCIREISVNGSDYFRGTFSSHTGRISRI 88
           I + D ++E+   G+DY   TF+S    I RI
Sbjct: 194 IGELDHVKELIKWGTDYLLKTFNSSADTIDRI 225


>12_02_0870 - 23852923-23853228,23853416-23853728,23853813-23853938,
            23854038-23854243,23854311-23854443,23854607-23854688,
            23854785-23854914,23855034-23855126,23855211-23855333,
            23855786-23855977,23858230-23858394,23858697-23858768,
            23858826-23858945,23859873-23859949,23860032-23860398,
            23860738-23861871
          Length = 1212

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 40   VDPRIFYFVICKDSACWISDTDCIREISVNGSDYFRGTFSSHTGRISRIGVFLLNPFQ 97
            VD  +F  +   +  C I    C+++    GS+ + G F++ T  I   G  +L+PF+
Sbjct: 1092 VDLAVFGHIHSYERTCPIYQNRCVQD----GSNLYTGQFNATTHVIVGGGGAMLSPFR 1145


>11_01_0469 + 3638493-3641166,3641286-3641653
          Length = 1013

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 56  WISDTDCIREISVNGSDYFRGTFSSHTGRISRIGVFLLNPFQ 97
           W+     ++++S+ GS++F G   S    +S++G   L+  Q
Sbjct: 409 WLGTIKTLQKVSL-GSNFFTGAIPSSFSNLSQLGELYLDSNQ 449


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.140    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,183
Number of Sequences: 37544
Number of extensions: 78177
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 5
length of query: 99
length of database: 14,793,348
effective HSP length: 71
effective length of query: 28
effective length of database: 12,127,724
effective search space: 339576272
effective search space used: 339576272
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)