GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000962-TA|BGIBMGA000962-PA|undefined
         (99 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)                 28   1.1  
SB_45687| Best HMM Match : WD40 (HMM E-Value=4.5e-16)                  28   1.4  
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  

>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
          Length = 1492

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 41  DPRIFYFVICKDSACWISDTDCIREISVNGSDYFR 75
           DP +    +  +++C I  T+ +R +  NGSD  R
Sbjct: 222 DPTVTIATLVPEASCLIMTTEILRSMLYNGSDVIR 256


>SB_45687| Best HMM Match : WD40 (HMM E-Value=4.5e-16)
          Length = 301

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 62  CIREISVNGS-DYFRGTFSSHTGRISRI 88
           C+  + VNG    FRG F+ HT R+S +
Sbjct: 118 CVYLLDVNGPVPAFRGQFTEHTDRVSSV 145


>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 67  SVNGSDYFRGTFSSHTGRISRIGVFLL 93
           S+   D+  GT SS TG I+R  V+ L
Sbjct: 258 SIGKVDFGNGTISSFTGNITRFNVWTL 284


>SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 66  ISVNGSDYFRGTFSSHTGRISRIGVFLL 93
           IS+NG+ Y +GT  S+  R SR   FL+
Sbjct: 626 ISINGNCY-QGTARSYRKRTSRFAAFLI 652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.140    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,038
Number of Sequences: 59808
Number of extensions: 92899
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 4
length of query: 99
length of database: 16,821,457
effective HSP length: 71
effective length of query: 28
effective length of database: 12,575,089
effective search space: 352102492
effective search space used: 352102492
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)