GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000961-TA|BGIBMGA000961-PA|undefined
         (92 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    27   0.59 
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    23   7.2  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    23   9.5  

>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 0.59
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 28  ETKMISLWLKALLAVETIPQDHQCRVL 54
           E K+  LWL  L  +   PQ HQ  VL
Sbjct: 439 EKKIFKLWLLVLKVIREGPQVHQSNVL 465


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 22 GARGSTETKMISLWLKALLAVETIPQDHQ 50
          GA G   TKM    L AL   + IP+D Q
Sbjct: 8  GASGDLATKMTFPALFALYVRKIIPEDFQ 36


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 29  TKMISLWLKALLAVETIPQDHQCRVL 54
           +K++   L+ L A   +P DHQC +L
Sbjct: 136 SKLLIFCLRILPA--DLPNDHQCHIL 159


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,883
Number of Sequences: 5004
Number of extensions: 10192
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 92
length of database: 2,362,478
effective HSP length: 62
effective length of query: 30
effective length of database: 2,052,230
effective search space: 61566900
effective search space used: 61566900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)