Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000961-TA|BGIBMGA000961-PA|undefined
(92 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 28 0.83
02_04_0362 - 22366668-22367516 28 0.83
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 27 1.5
04_04_1398 - 33245268-33245876,33247516-33247608,33247639-332478... 27 2.5
01_06_0117 + 26605186-26605443,26605540-26605583,26605659-266057... 27 2.5
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452... 26 4.4
02_04_0377 - 22479800-22479872,22479920-22479981,22480007-224803... 26 4.4
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096... 25 5.9
02_03_0362 + 18158975-18159337 25 5.9
03_02_0783 + 11151007-11151343,11153375-11153530,11153898-11153992 25 7.8
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 28.3 bits (60), Expect = 0.83
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 3 RDPACRLIAGAGRTPHKYS 21
RD CRL+ G G TP+ YS
Sbjct: 157 RDDGCRLVLGLGPTPNFYS 175
>02_04_0362 - 22366668-22367516
Length = 282
Score = 28.3 bits (60), Expect = 0.83
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 17 PHKYSGARGSTETKMISLWLKALLA--VETIPQDHQCRVLQQDTRAPVTTGIRSLKLV 72
PH +S G+ + +M+SL L+ L ++ +P L+ D + + G LK V
Sbjct: 79 PHSFSSTSGTKDLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAV 136
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 10 IAGAGRTPHKYSGARGSTETKMISLWLKALLAVETIPQDHQCR 52
+AG G + KY GA T T + +KA VE +P++ R
Sbjct: 1 MAGGGTSIRKYVGALKDTTTDLDIAIVKATNHVENLPKEKYIR 43
>04_04_1398 -
33245268-33245876,33247516-33247608,33247639-33247827,
33248146-33248496
Length = 413
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 10 IAGAGRTPHKYSGARGSTETKM 31
I GAGR P SG+RGS + ++
Sbjct: 18 IIGAGRPPSPPSGSRGSADRRL 39
>01_06_0117 +
26605186-26605443,26605540-26605583,26605659-26605737,
26605822-26605944,26606300-26606482,26606562-26606648,
26608149-26608255,26608387-26608474,26608805-26608885,
26608983-26609059,26609183-26609318,26609548-26609610,
26609983-26610563,26610816-26610933
Length = 674
Score = 26.6 bits (56), Expect = 2.5
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 18 HKYSGARGSTETKMISLWLKALLAVETIPQDHQCRVLQQDTRAPVTTGIRSLKLVQTLY- 76
H Y G+ +S WL L A + ++ RV P T R L+L++ L
Sbjct: 167 HGYHGSYSLRHWLQLSDWLPTLEATLALDEEQVRRVGDDSVGGPAVT--RQLRLIRILMR 224
Query: 77 -ALFGLKYCNA 86
L G+ Y ++
Sbjct: 225 DLLIGVNYLHS 235
>12_01_0559 +
4527769-4527924,4528038-4528129,4528799-4528905,
4528987-4529042,4529196-4529346,4530223-4530528,
4530753-4531597
Length = 570
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 2 LRDPACRLIAGAGRTPHKYSG 22
LRDP RL+ G PHK +G
Sbjct: 77 LRDPFFRLVNGFVENPHKKTG 97
>02_04_0377 -
22479800-22479872,22479920-22479981,22480007-22480300,
22481723-22481825,22481949-22482046
Length = 209
Score = 25.8 bits (54), Expect = 4.4
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 25 GSTETKMISLWLKALLAVETIPQDHQCRV 53
GST+ K + +W +L + + + +CR+
Sbjct: 173 GSTKEKALQMWTLSLFLLSLVLNEDKCRI 201
>02_05_0418 +
28807763-28807777,28809216-28809242,28809588-28809621,
28809909-28810154,28810518-28810948,28812759-28813418
Length = 470
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 2 LRDPACRLIAGAGRTPHKYSGARGSTETKMISLWL 36
L D A R +A GR + ARG TE + L L
Sbjct: 279 LSDIAGRYVASLGRAASAIAEARGRTEPNLADLTL 313
>02_03_0362 + 18158975-18159337
Length = 120
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 4 DPACRLIAGAGRTPHKYSGARGS 26
D CR AG+GR P + G G+
Sbjct: 66 DSGCRTCAGSGRMPCRSCGGSGT 88
>03_02_0783 + 11151007-11151343,11153375-11153530,11153898-11153992
Length = 195
Score = 25.0 bits (52), Expect = 7.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 45 IPQDHQCRVLQQDTRAP 61
+P D++C V++ DT P
Sbjct: 119 VPDDYECEVIEDDTLIP 135
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.133 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,835
Number of Sequences: 37544
Number of extensions: 79887
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 11
length of query: 92
length of database: 14,793,348
effective HSP length: 70
effective length of query: 22
effective length of database: 12,165,268
effective search space: 267635896
effective search space used: 267635896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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