GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000961-TA|BGIBMGA000961-PA|undefined
         (92 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)           30   0.23 
SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_6592| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   3.7  
SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)                 26   4.8  
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   6.4  
SB_25750| Best HMM Match : AFG1_ATPase (HMM E-Value=5.6e-12)           25   6.4  

>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
          Length = 1336

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 37  KALLAVETIPQDHQCRVLQQDTRAPVTTGIRSLKLV 72
           K LL  E +P DH+C V   +   P  T  +  KL+
Sbjct: 560 KCLLCKEMVPPDHRCYVTTGEAALPANTDGKRTKLI 595


>SB_41147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 44 TIPQDHQCRVLQQDTRAPVTT 64
          TIP D+QC + Q   R PV T
Sbjct: 35 TIPPDYQCPICQLPFRDPVQT 55


>SB_6592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 16  TPHKYSGARGSTETKMISLWLKALLAVETIPQDHQ 50
           TP K SG +GS +       + + +AVE +  +HQ
Sbjct: 558 TPLKESGQQGSDDPSKAQKSINSYIAVELLSTNHQ 592


>SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)
          Length = 769

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 16  TPHKYSGARGSTETKMISLWLKALLAVETIPQDHQCRVLQQDTRAPVTTGIRSLKLV 72
           T  +Y  A   T  +++  + K+L+ ++  P+    + LQQ  R P++ G    +L+
Sbjct: 547 TGAQYHPATNGTAERLVHTFEKSLVKIDGPPKAALQQFLQQYRRTPLSCGYSPSELL 603


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 21   SGARGSTETKMISLWLKALLAVETIPQDHQCRVLQQDTRAPVTTG 65
            +G   S+   M+++WL      + I +D   RVL+  +R  +TTG
Sbjct: 1108 AGLGASSARAMLTVWL------QWIKRDDSMRVLRNSSRVIITTG 1146


>SB_25750| Best HMM Match : AFG1_ATPase (HMM E-Value=5.6e-12)
          Length = 424

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 51  CRVLQQDTRAPVTTGIRSLKLVQTLYALFGLKYCNALSSPE 91
           C V+  D   P     R L  +  +Y      YC A S+PE
Sbjct: 192 CDVVGADEYLPENEARRLLSFIDAVYESRVKLYCTAASAPE 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,436
Number of Sequences: 59808
Number of extensions: 83136
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 6
length of query: 92
length of database: 16,821,457
effective HSP length: 69
effective length of query: 23
effective length of database: 12,694,705
effective search space: 291978215
effective search space used: 291978215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)