GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000961-TA|BGIBMGA000961-PA|undefined
         (92 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003523-1|AAO39527.1|  658|Drosophila melanogaster RE22964p pro...    29   0.60 
AY094817-1|AAM11170.1|  658|Drosophila melanogaster LD33695p pro...    29   0.60 
AF242203-1|AAF64499.1|  658|Drosophila melanogaster Pins protein...    29   0.60 
AE014297-4144|AAF56721.1|  658|Drosophila melanogaster CG5692-PA...    29   0.60 
BT024218-1|ABC86280.1|  544|Drosophila melanogaster RE08574p pro...    28   1.8  
AE014134-2481|AAO41192.2|  948|Drosophila melanogaster CG33090-P...    28   1.8  
AJ272067-1|CAB75734.1|  658|Drosophila melanogaster rapsynoid pr...    27   2.4  
AF230071-1|AAF36967.1|  658|Drosophila melanogaster Partner of I...    27   3.2  

>BT003523-1|AAO39527.1|  658|Drosophila melanogaster RE22964p
          protein.
          Length = 658

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 12 GAGRTPHKYSGARGSTETKMISLWLKALLAVETIPQDHQCRVLQQDTRAPVTTGIRSLKL 71
          G G T H  +  +GS      S+ L+  L  E + +   CR      +A +  G   L+ 
Sbjct: 20 GGGTTSHDGNSQQGSGSDGGSSMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTEDLRT 79

Query: 72 VQTLYALFGLKY 83
          +  +Y+  G  Y
Sbjct: 80 LSAIYSQLGNAY 91


>AY094817-1|AAM11170.1|  658|Drosophila melanogaster LD33695p
          protein.
          Length = 658

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 12 GAGRTPHKYSGARGSTETKMISLWLKALLAVETIPQDHQCRVLQQDTRAPVTTGIRSLKL 71
          G G T H  +  +GS      S+ L+  L  E + +   CR      +A +  G   L+ 
Sbjct: 20 GGGTTSHDGNSQQGSGSDGGSSMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTEDLRT 79

Query: 72 VQTLYALFGLKY 83
          +  +Y+  G  Y
Sbjct: 80 LSAIYSQLGNAY 91


>AF242203-1|AAF64499.1|  658|Drosophila melanogaster Pins protein
          protein.
          Length = 658

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 12 GAGRTPHKYSGARGSTETKMISLWLKALLAVETIPQDHQCRVLQQDTRAPVTTGIRSLKL 71
          G G T H  +  +GS      S+ L+  L  E + +   CR      +A +  G   L+ 
Sbjct: 20 GGGTTSHDGNSQQGSGSDGGSSMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTEDLRT 79

Query: 72 VQTLYALFGLKY 83
          +  +Y+  G  Y
Sbjct: 80 LSAIYSQLGNAY 91


>AE014297-4144|AAF56721.1|  658|Drosophila melanogaster CG5692-PA
          protein.
          Length = 658

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 12 GAGRTPHKYSGARGSTETKMISLWLKALLAVETIPQDHQCRVLQQDTRAPVTTGIRSLKL 71
          G G T H  +  +GS      S+ L+  L  E + +   CR      +A +  G   L+ 
Sbjct: 20 GGGTTSHDGNSQQGSGSDGGSSMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTEDLRT 79

Query: 72 VQTLYALFGLKY 83
          +  +Y+  G  Y
Sbjct: 80 LSAIYSQLGNAY 91


>BT024218-1|ABC86280.1|  544|Drosophila melanogaster RE08574p
           protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 19  KYSGARGSTETKMISLWLKALLAVETIPQDHQCRVLQQ 56
           +Y+  + ST  ++I  W + +L  ET+P  ++C +  Q
Sbjct: 436 EYALRQYSTWERLIDAWQRPILNDETLPDWYKCAIFNQ 473


>AE014134-2481|AAO41192.2|  948|Drosophila melanogaster CG33090-PB
           protein.
          Length = 948

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 19  KYSGARGSTETKMISLWLKALLAVETIPQDHQCRVLQQ 56
           +Y+  + ST  ++I  W + +L  ET+P  ++C +  Q
Sbjct: 436 EYALRQYSTWERLIDAWQRPILNDETLPDWYKCAIFNQ 473


>AJ272067-1|CAB75734.1|  658|Drosophila melanogaster rapsynoid
          protein.
          Length = 658

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/72 (23%), Positives = 29/72 (40%)

Query: 12 GAGRTPHKYSGARGSTETKMISLWLKALLAVETIPQDHQCRVLQQDTRAPVTTGIRSLKL 71
          G G   H  +  +GS      S+ L+  L  E + +   CR      +A +  G   L+ 
Sbjct: 20 GGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTEDLRT 79

Query: 72 VQTLYALFGLKY 83
          +  +Y+  G  Y
Sbjct: 80 LSAIYSQLGNAY 91


>AF230071-1|AAF36967.1|  658|Drosophila melanogaster Partner of
          Inscuteable protein.
          Length = 658

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/72 (23%), Positives = 28/72 (38%)

Query: 12 GAGRTPHKYSGARGSTETKMISLWLKALLAVETIPQDHQCRVLQQDTRAPVTTGIRSLKL 71
          G G   H  +  +GS      S+ L+  L  E +     CR      +A +  G   L+ 
Sbjct: 20 GGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT 79

Query: 72 VQTLYALFGLKY 83
          +  +Y+  G  Y
Sbjct: 80 LSAIYSQLGNAY 91


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,261,423
Number of Sequences: 52641
Number of extensions: 128863
Number of successful extensions: 249
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 8
length of query: 92
length of database: 24,830,863
effective HSP length: 71
effective length of query: 21
effective length of database: 21,093,352
effective search space: 442960392
effective search space used: 442960392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)