GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000961-TA|BGIBMGA000961-PA|undefined
         (92 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    25   5.4  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    25   5.4  
Z92825-4|CAB07312.1|  467|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U80452-1|AAB37864.1|  270|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AF039716-6|AAY55880.1|  215|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z47811-2|CAA87786.1| 1302|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform a protein.
          Length = 1212

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 8   RLIAGAGRTPHKYSGARGSTETKMISLWLKALLAV 42
           +++   GR PHK SG    T   +I+ ++  LL V
Sbjct: 295 KVMQNNGRAPHKTSGIEKLTNKFIIACFIMLLLMV 329


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform b protein.
          Length = 1454

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 8   RLIAGAGRTPHKYSGARGSTETKMISLWLKALLAV 42
           +++   GR PHK SG    T   +I+ ++  LL V
Sbjct: 295 KVMQNNGRAPHKTSGIEKLTNKFIIACFIMLLLMV 329


>Z92825-4|CAB07312.1|  467|Caenorhabditis elegans Hypothetical
           protein C13C4.6 protein.
          Length = 467

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 31  MISLWLKALLAVETIPQDHQCRVLQQDTRAPVTTGI-RSLKLVQTLYALF 79
           +I L+L  +L   ++P+       Q ++  PVT+GI + LK  Q L  +F
Sbjct: 205 IIPLFLLFVLCRRSVPKTPPSASSQHESSGPVTSGIFKCLKDRQFLIQIF 254


>U80452-1|AAB37864.1|  270|Caenorhabditis elegans Hypothetical
          protein C16C8.18 protein.
          Length = 270

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 25 GSTETKMISLWLK--ALLAVETIPQDHQCRVLQQ 56
          GS   K IS  L   A + +E++P +H+C +L++
Sbjct: 43 GSFSAKSISSALAKIATMEIESVPAEHRCGLLRR 76


>AF039716-6|AAY55880.1|  215|Caenorhabditis elegans Hypothetical
           protein W03G9.9 protein.
          Length = 215

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 4/34 (11%)

Query: 40  LAVETIPQDHQCRVLQQDTR----APVTTGIRSL 69
           + V TIP++H+ + L+Q  R    +P+T G R++
Sbjct: 92  IKVITIPKEHRQKTLEQPIRPKNWSPITDGKRAI 125


>Z47811-2|CAA87786.1| 1302|Caenorhabditis elegans Hypothetical
           protein K02C4.3 protein.
          Length = 1302

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 36  LKALLAVETIPQDHQCRVLQQ 56
           L AL A ETIP D Q +VLQ+
Sbjct: 804 LTALEAFETIPPDLQEKVLQK 824


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,165
Number of Sequences: 27539
Number of extensions: 58842
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 6
length of query: 92
length of database: 12,573,161
effective HSP length: 69
effective length of query: 23
effective length of database: 10,672,970
effective search space: 245478310
effective search space used: 245478310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)