GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000961-TA|BGIBMGA000961-PA|undefined
         (92 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27420.1 68415.m03314 cysteine proteinase, putative contains ...    27   2.2  
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con...    25   5.1  
At3g44090.1 68416.m04723 F-box family protein contains F-box dom...    25   6.7  
At3g06440.1 68416.m00745 galactosyltransferase family protein co...    25   8.9  
At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH p...    25   8.9  

>At2g27420.1 68415.m03314 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 348

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 17  PHKYSGARGSTETKMISLWLKALLA-VETIPQDHQCRVLQQDTRAPVTTGI 66
           P++ S    S+ T + S +  A ++  ET+P +++  +LQ  ++ PV+ GI
Sbjct: 216 PYQESQQTCSSSTTLSSSFRAATISGYETVPMNNEEALLQAVSQQPVSVGI 266


>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
           contains similarity to 30S ribosomal protein S5
           GI:6969105 from [Campylobacter jejuni]
          Length = 515

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 60  APVTTGIRSLKLVQTLYALFGLK 82
           AP TTG+++ ++V+T+  L G K
Sbjct: 447 APTTTGMKAGRVVKTILLLAGFK 469


>At3g44090.1 68416.m04723 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 449

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 27  TETKMISLWLKALLAVETIPQDHQCRVLQ 55
           T TK++ L L   LA   IPQD    VL+
Sbjct: 152 TSTKLVKLSLGTRLACPRIPQDTSLPVLK 180


>At3g06440.1 68416.m00745 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 619

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 32  ISLWLKALLAVET---IPQDHQCRVLQQDTRAPVTTGIRSLKLV 72
           +S  LK L  + T   IP DH   ++++  +AP  +G R   LV
Sbjct: 332 VSGGLKILSVLATRLPIPDDHASLIIEEKLKAPSLSGTRIELLV 375


>At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH
           protein contains Pfam profile PF00010: Helix-loop-helix
           DNA-binding domain; PMID: 12679534; putative bHLH084
           transcription factor
          Length = 328

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 37  KALLAVETIPQDHQCRVLQQDTRAPVTT 64
           K+LL +ET+ ++H   +LQ +     TT
Sbjct: 111 KSLLPLETVAENHDHSMLQPENSLTTTT 138


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,039
Number of Sequences: 28952
Number of extensions: 57391
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 5
length of query: 92
length of database: 12,070,560
effective HSP length: 69
effective length of query: 23
effective length of database: 10,072,872
effective search space: 231676056
effective search space used: 231676056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)