GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000960-TA|BGIBMGA000960-PA|undefined
         (153 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0254 - 6334767-6335465                                           27   5.0  
03_05_0751 - 27389910-27392105                                         27   5.0  
09_04_0685 + 19454234-19454399,19454500-19454819,19455337-19455594     27   6.6  
02_01_0302 - 2021221-2023305                                           27   8.7  

>09_02_0254 - 6334767-6335465
          Length = 232

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 49 GEEIFSGDVGGGTLSRRRRGDD 70
          G E+ +  VGGG    RRR DD
Sbjct: 75 GHEVVASTVGGGASGGRRRADD 96


>03_05_0751 - 27389910-27392105
          Length = 731

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 19  RYVSSPQRQASPFPLESTXXXXXXXXXXSKGEEIFSGDVGGGTLSRRRR 67
           ++  SP RQ   +PL+S           S    + S ++ G   S +RR
Sbjct: 120 KFPPSPDRQLVAWPLDSPSESSTSSYPHSLASSVTSSNISGAVDSSQRR 168


>09_04_0685 + 19454234-19454399,19454500-19454819,19455337-19455594
          Length = 247

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 2   NNEQRRIYGSEAGDNPPRYVSSPQRQASPFPLESTXXXXXXXXXXSKG-EEIFSGDVGGG 60
           N   RR  G   G+ P   V   +R+  P P  S+           +G EE+ SG + G 
Sbjct: 181 NRSSRRRAGDADGETPVTGVHGHRRR-QPSPSPSSSSCVTAEVSDGEGEEEVSSGSINGA 239

Query: 61  TLSRRR 66
             + +R
Sbjct: 240 PSASQR 245


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 14  GDNPPRYVSSPQRQASPFP 32
           G  PP  VSSP R+  P+P
Sbjct: 397 GQGPPAPVSSPPRRRGPYP 415


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,110,791
Number of Sequences: 37544
Number of extensions: 136057
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 7
length of query: 153
length of database: 14,793,348
effective HSP length: 76
effective length of query: 77
effective length of database: 11,940,004
effective search space: 919380308
effective search space used: 919380308
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)