GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000960-TA|BGIBMGA000960-PA|undefined
         (153 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.45 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   5.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.45
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 2   NNEQRRIYGSEAGDNPPRYVSSPQRQA 28
           NNE     G+ A D PP   SS + +A
Sbjct: 258 NNEDSSDSGAAASDRPPASASSNEHEA 284


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 11  SEAGDNPPRYVSSPQ 25
           +E G+N P Y+S P+
Sbjct: 95  AEPGNNRPVYISQPR 109



 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 11  SEAGDNPPRYVSSPQ 25
           +E G+N P Y+S P+
Sbjct: 151 AEPGNNRPVYISQPR 165


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,162
Number of Sequences: 429
Number of extensions: 1002
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 153
length of database: 140,377
effective HSP length: 53
effective length of query: 100
effective length of database: 117,640
effective search space: 11764000
effective search space used: 11764000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)