Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000959-TA|BGIBMGA000959-PA|IPR000054|Ribosomal protein
L31e
         (124 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   3e-08
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  42   2e-04

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 26  LHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR--NVPFXXXX 83
           +H    G  F      + K ++K  +K+  +    V TR       K +   NVP+    
Sbjct: 750 IHNAARGCNFFLLLDFSFKMVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYRVRV 809

Query: 84  XXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 123
                 N+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 810 RLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849



 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 23/38 (60%), Positives = 29/38 (76%)

Query: 1   MAKPKGERTGKSAINEVVTREYTVNLHKRLHGVGFKKR 38
           M K   ++ G+SAINEVVTREYT+NLHKR+HG+    R
Sbjct: 769 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query: 76  NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTE 117
           NVP+          N+DEDS HKL+TLVT V V++ K L  E
Sbjct: 2   NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,698,366
Number of Sequences: 59808
Number of extensions: 122727
Number of successful extensions: 198
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 3
length of query: 124
length of database: 16,821,457
effective HSP length: 74
effective length of query: 50
effective length of database: 12,395,665
effective search space: 619783250
effective search space used: 619783250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)