BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000959-TA|BGIBMGA000959-PA|IPR000054|Ribosomal protein L31e (124 letters) Database: fruitfly 52,641 sequences; 24,830,863 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY113508-1|AAM29513.1| 124|Drosophila melanogaster RE59131p pro... 177 5e-45 AE013599-889|AAM71074.1| 124|Drosophila melanogaster CG1821-PC,... 177 5e-45 AE013599-888|AAF58920.1| 124|Drosophila melanogaster CG1821-PB,... 177 5e-45 AE013599-887|AAM71073.1| 124|Drosophila melanogaster CG1821-PA,... 177 5e-45 AY095051-1|AAM11379.1| 1838|Drosophila melanogaster LD40310p pro... 28 3.1 AE014134-1014|AAN10569.1| 1838|Drosophila melanogaster CG9088-PB... 28 3.1 AE014134-1013|AAF52319.1| 1838|Drosophila melanogaster CG9088-PA... 28 3.1 >AY113508-1|AAM29513.1| 124|Drosophila melanogaster RE59131p protein. Length = 124 Score = 177 bits (430), Expect = 5e-45 Identities = 80/124 (64%), Positives = 99/124 (79%) Query: 1 MAKPKGERTGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60 M K KGE+ KSAINEVVTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R Sbjct: 1 MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVR 60 Query: 61 VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120 +DTRLNK +WSKG+R+ PF NDDEDS +KL+T VTYVPV++ K LQTENV+ Sbjct: 61 IDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120 Query: 121 ASQE 124 +S + Sbjct: 121 SSDD 124 >AE013599-889|AAM71074.1| 124|Drosophila melanogaster CG1821-PC, isoform C protein. Length = 124 Score = 177 bits (430), Expect = 5e-45 Identities = 80/124 (64%), Positives = 99/124 (79%) Query: 1 MAKPKGERTGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60 M K KGE+ KSAINEVVTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R Sbjct: 1 MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVR 60 Query: 61 VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120 +DTRLNK +WSKG+R+ PF NDDEDS +KL+T VTYVPV++ K LQTENV+ Sbjct: 61 IDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120 Query: 121 ASQE 124 +S + Sbjct: 121 SSDD 124 >AE013599-888|AAF58920.1| 124|Drosophila melanogaster CG1821-PB, isoform B protein. Length = 124 Score = 177 bits (430), Expect = 5e-45 Identities = 80/124 (64%), Positives = 99/124 (79%) Query: 1 MAKPKGERTGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60 M K KGE+ KSAINEVVTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R Sbjct: 1 MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVR 60 Query: 61 VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120 +DTRLNK +WSKG+R+ PF NDDEDS +KL+T VTYVPV++ K LQTENV+ Sbjct: 61 IDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120 Query: 121 ASQE 124 +S + Sbjct: 121 SSDD 124 >AE013599-887|AAM71073.1| 124|Drosophila melanogaster CG1821-PA, isoform A protein. Length = 124 Score = 177 bits (430), Expect = 5e-45 Identities = 80/124 (64%), Positives = 99/124 (79%) Query: 1 MAKPKGERTGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60 M K KGE+ KSAINEVVTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R Sbjct: 1 MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVR 60 Query: 61 VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120 +DTRLNK +WSKG+R+ PF NDDEDS +KL+T VTYVPV++ K LQTENV+ Sbjct: 61 IDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120 Query: 121 ASQE 124 +S + Sbjct: 121 SSDD 124 >AY095051-1|AAM11379.1| 1838|Drosophila melanogaster LD40310p protein. Length = 1838 Score = 28.3 bits (60), Expect = 3.1 Identities = 13/28 (46%), Positives = 18/28 (64%) Query: 12 SAINEVVTREYTVNLHKRLHGVGFKKRA 39 S+I+E VT EY +LH HG GF ++ Sbjct: 554 SSIDEDVTVEYGADLHTMDHGSGFPTKS 581 >AE014134-1014|AAN10569.1| 1838|Drosophila melanogaster CG9088-PB, isoform B protein. Length = 1838 Score = 28.3 bits (60), Expect = 3.1 Identities = 13/28 (46%), Positives = 18/28 (64%) Query: 12 SAINEVVTREYTVNLHKRLHGVGFKKRA 39 S+I+E VT EY +LH HG GF ++ Sbjct: 554 SSIDEDVTVEYGADLHTMDHGSGFPTKS 581 >AE014134-1013|AAF52319.1| 1838|Drosophila melanogaster CG9088-PA, isoform A protein. Length = 1838 Score = 28.3 bits (60), Expect = 3.1 Identities = 13/28 (46%), Positives = 18/28 (64%) Query: 12 SAINEVVTREYTVNLHKRLHGVGFKKRA 39 S+I+E VT EY +LH HG GF ++ Sbjct: 554 SSIDEDVTVEYGADLHTMDHGSGFPTKS 581 Database: fruitfly Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 24,830,863 Number of sequences in database: 52,641 Lambda K H 0.316 0.132 0.377 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,195,892 Number of Sequences: 52641 Number of extensions: 169889 Number of successful extensions: 208 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 201 Number of HSP's gapped (non-prelim): 7 length of query: 124 length of database: 24,830,863 effective HSP length: 76 effective length of query: 48 effective length of database: 20,830,147 effective search space: 999847056 effective search space used: 999847056 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits) S2: 56 (26.6 bits)
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