Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000959-TA|BGIBMGA000959-PA|IPR000054|Ribosomal protein
L31e
         (124 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.3  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   3.1  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   4.1  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              20   9.4  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 5/18 (27%), Positives = 13/18 (72%)

Query: 61  VDTRLNKFLWSKGVRNVP 78
           +D R  + +W++G +++P
Sbjct: 428 LDIRTEELIWARGTKDIP 445


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 5/18 (27%), Positives = 13/18 (72%)

Query: 61  VDTRLNKFLWSKGVRNVP 78
           +D R  + +W++G +++P
Sbjct: 518 LDIRTEELIWARGTKDIP 535


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 99  LFTLVTYVPVASIKGLQTENVD 120
           L T+VT+V +  +K +  + V+
Sbjct: 9   LITIVTFVALKPVKSMSADQVE 30


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding
          protein ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 37 KRAPRAIKEIRKFAEKQMGTPDIRVD 62
          + A + IK +RK   K+  TP   +D
Sbjct: 30 EEAKKTIKNLRKVCSKKNDTPKELLD 55


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 97  HKLFTLVTYVPVASIKGL 114
           HK  TL   VP A+ KG+
Sbjct: 49  HKPITLTIPVPQAANKGM 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,410
Number of Sequences: 429
Number of extensions: 952
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 124
length of database: 140,377
effective HSP length: 51
effective length of query: 73
effective length of database: 118,498
effective search space:  8650354
effective search space used:  8650354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)