GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000959-TA|BGIBMGA000959-PA|IPR000054|Ribosomal protein
L31e
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...   116   1e-27
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   4.6  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score =  116 bits (278), Expect = 1e-27
 Identities = 57/104 (54%), Positives = 74/104 (71%), Gaps = 2/104 (1%)

Query: 9   TGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 68
           T KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T ++RVD  LNK 
Sbjct: 4   TKKSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKE 63

Query: 69  LWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIK 112
           +W +G+RNVP           +D++D A  L+T V  V VA+ K
Sbjct: 64  VWKRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANPK 105


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 14  INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 46
           INE VT +Y  N+   + G+G  ++A   +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,020
Number of Sequences: 5004
Number of extensions: 16573
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 2
length of query: 124
length of database: 2,362,478
effective HSP length: 65
effective length of query: 59
effective length of database: 2,037,218
effective search space: 120195862
effective search space used: 120195862
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)