GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000959-TA|BGIBMGA000959-PA|IPR000054|Ribosomal protein
L31e
         (124 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      134   3e-32
08_02_1181 - 24985963-24986242,24987109-24987197                      130   2e-31
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    113   3e-26
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   4.3  
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272...    26   10.0 

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  134 bits (323), Expect = 3e-32
 Identities = 65/118 (55%), Positives = 84/118 (71%), Gaps = 2/118 (1%)

Query: 5   KGERTGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 64
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63

Query: 65  LNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120
           LNK +WS G+R+VP           ND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 64  LNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  130 bits (315), Expect = 2e-31
 Identities = 63/116 (54%), Positives = 81/116 (69%), Gaps = 2/116 (1%)

Query: 7   ERTGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLN 66
           ++ G +   EVVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +LN
Sbjct: 4   KKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLN 63

Query: 67  KFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120
           K +WS G+R+VP           ND+ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 64  KHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  113 bits (273), Expect = 3e-26
 Identities = 64/136 (47%), Positives = 84/136 (61%), Gaps = 21/136 (15%)

Query: 3   KPKGERTGKSAINEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEI 46
           K +G  T K   +EVVTREYT+NLHKRLHG                  FKK+AP AIKEI
Sbjct: 4   KKRGAGTRK---DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEI 60

Query: 47  RKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY- 105
           RKFA+K MGT DIR+D +LNK +W+ G+R+VP           ND+ED+  +L++LVT  
Sbjct: 61  RKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVA 120

Query: 106 -VPVASIKGLQTENVD 120
            +P   +KGL T+ V+
Sbjct: 121 EIPAEGLKGLGTKVVE 136


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 24  VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 58
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


>05_07_0331 -
           29324967-29326256,29326919-29327020,29327226-29327278,
           29327628-29327674,29327762-29327841,29327933-29328016,
           29328383-29328433,29328925-29329050,29329231-29329347,
           29329710-29329851,29329986-29330053,29330509-29330608,
           29330713-29330840,29330929-29330997,29331083-29331205
          Length = 859

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 30  LHGVGFKKRAPRAIKEIRKFAEKQMG--TPD-IRVDTRLNKFLWSKG 73
           + GV  K R  R I+E+ +    + G  T D + VDT L +F+W +G
Sbjct: 69  IEGVSHKIR--RQIEELERAGGVESGALTVDGVPVDTYLTRFVWDEG 113


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,008
Number of Sequences: 37544
Number of extensions: 100184
Number of successful extensions: 209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 6
length of query: 124
length of database: 14,793,348
effective HSP length: 74
effective length of query: 50
effective length of database: 12,015,092
effective search space: 600754600
effective search space used: 600754600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)