GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000959-TA|BGIBMGA000959-PA|IPR000054|Ribosomal protein
L31e
         (124 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X15940-1|CAA34066.1|  125|Homo sapiens protein ( Human mRNA for ...   180   2e-45
BC070373-1|AAH70373.1|  125|Homo sapiens ribosomal protein L31 p...   180   2e-45
BC017343-1|AAH17343.1|  125|Homo sapiens ribosomal protein L31 p...   180   2e-45
AC016738-2|AAY14823.1|  125|Homo sapiens unknown protein.             180   2e-45
AB061830-1|BAB79468.1|  125|Homo sapiens ribosomal protein L31 p...   180   2e-45
X69181-1|CAA48925.1|  121|Homo sapiens ribosomal protein L31 pro...   178   5e-45
BC070210-1|AAH70210.1|  121|Homo sapiens RPL31 protein protein.       168   4e-42
AB007180-1|BAA25839.1|   47|Homo sapiens ribosomal protein L31 p...    55   7e-08

>X15940-1|CAA34066.1|  125|Homo sapiens protein ( Human mRNA for
           ribosomal protein L31. ).
          Length = 125

 Score =  180 bits (437), Expect = 2e-45
 Identities = 82/120 (68%), Positives = 99/120 (82%), Gaps = 1/120 (0%)

Query: 2   AKPKGERT-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60
           AK  GE+  G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R
Sbjct: 4   AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63

Query: 61  VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
           +DTRLNK +W+KG+RNVP+          N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 64  IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123


>BC070373-1|AAH70373.1|  125|Homo sapiens ribosomal protein L31
           protein.
          Length = 125

 Score =  180 bits (437), Expect = 2e-45
 Identities = 82/120 (68%), Positives = 99/120 (82%), Gaps = 1/120 (0%)

Query: 2   AKPKGERT-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60
           AK  GE+  G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R
Sbjct: 4   AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63

Query: 61  VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
           +DTRLNK +W+KG+RNVP+          N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 64  IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123


>BC017343-1|AAH17343.1|  125|Homo sapiens ribosomal protein L31
           protein.
          Length = 125

 Score =  180 bits (437), Expect = 2e-45
 Identities = 82/120 (68%), Positives = 99/120 (82%), Gaps = 1/120 (0%)

Query: 2   AKPKGERT-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60
           AK  GE+  G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R
Sbjct: 4   AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63

Query: 61  VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
           +DTRLNK +W+KG+RNVP+          N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 64  IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123


>AC016738-2|AAY14823.1|  125|Homo sapiens unknown protein.
          Length = 125

 Score =  180 bits (437), Expect = 2e-45
 Identities = 82/120 (68%), Positives = 99/120 (82%), Gaps = 1/120 (0%)

Query: 2   AKPKGERT-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60
           AK  GE+  G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R
Sbjct: 4   AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63

Query: 61  VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
           +DTRLNK +W+KG+RNVP+          N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 64  IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123


>AB061830-1|BAB79468.1|  125|Homo sapiens ribosomal protein L31
           protein.
          Length = 125

 Score =  180 bits (437), Expect = 2e-45
 Identities = 82/120 (68%), Positives = 99/120 (82%), Gaps = 1/120 (0%)

Query: 2   AKPKGERT-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60
           AK  GE+  G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R
Sbjct: 4   AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63

Query: 61  VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
           +DTRLNK +W+KG+RNVP+          N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 64  IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123


>X69181-1|CAA48925.1|  121|Homo sapiens ribosomal protein L31
           protein.
          Length = 121

 Score =  178 bits (433), Expect = 5e-45
 Identities = 81/119 (68%), Positives = 98/119 (82%), Gaps = 1/119 (0%)

Query: 3   KPKGERT-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 61
           K  GE+  G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R+
Sbjct: 1   KKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRI 60

Query: 62  DTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
           DTRLNK +W+KG+RNVP+          N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 61  DTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 119


>BC070210-1|AAH70210.1|  121|Homo sapiens RPL31 protein protein.
          Length = 121

 Score =  168 bits (409), Expect = 4e-42
 Identities = 76/112 (67%), Positives = 93/112 (83%), Gaps = 1/112 (0%)

Query: 2   AKPKGERT-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60
           AK  GE+  G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MGTPD+R
Sbjct: 4   AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63

Query: 61  VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIK 112
           +DTRLNK +W+KG+RNVP+          N+DEDS +KL+TLVTYVPV + K
Sbjct: 64  IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFK 115


>AB007180-1|BAA25839.1|   47|Homo sapiens ribosomal protein L31
           protein.
          Length = 47

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 25/45 (55%), Positives = 30/45 (66%)

Query: 76  NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
           NVP+          N+DEDS +KL+TLVTYVPV + K LQT NVD
Sbjct: 1   NVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 45


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,201,824
Number of Sequences: 224733
Number of extensions: 489610
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 8
length of query: 124
length of database: 73,234,838
effective HSP length: 81
effective length of query: 43
effective length of database: 55,031,465
effective search space: 2366352995
effective search space used: 2366352995
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)