GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000959-TA|BGIBMGA000959-PA|IPR000054|Ribosomal protein
L31e
         (124 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113508-1|AAM29513.1|  124|Drosophila melanogaster RE59131p pro...   177   5e-45
AE013599-889|AAM71074.1|  124|Drosophila melanogaster CG1821-PC,...   177   5e-45
AE013599-888|AAF58920.1|  124|Drosophila melanogaster CG1821-PB,...   177   5e-45
AE013599-887|AAM71073.1|  124|Drosophila melanogaster CG1821-PA,...   177   5e-45
AY095051-1|AAM11379.1| 1838|Drosophila melanogaster LD40310p pro...    28   3.1  
AE014134-1014|AAN10569.1| 1838|Drosophila melanogaster CG9088-PB...    28   3.1  
AE014134-1013|AAF52319.1| 1838|Drosophila melanogaster CG9088-PA...    28   3.1  

>AY113508-1|AAM29513.1|  124|Drosophila melanogaster RE59131p
           protein.
          Length = 124

 Score =  177 bits (430), Expect = 5e-45
 Identities = 80/124 (64%), Positives = 99/124 (79%)

Query: 1   MAKPKGERTGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60
           M K KGE+  KSAINEVVTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R
Sbjct: 1   MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVR 60

Query: 61  VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
           +DTRLNK +WSKG+R+ PF          NDDEDS +KL+T VTYVPV++ K LQTENV+
Sbjct: 61  IDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120

Query: 121 ASQE 124
           +S +
Sbjct: 121 SSDD 124


>AE013599-889|AAM71074.1|  124|Drosophila melanogaster CG1821-PC,
           isoform C protein.
          Length = 124

 Score =  177 bits (430), Expect = 5e-45
 Identities = 80/124 (64%), Positives = 99/124 (79%)

Query: 1   MAKPKGERTGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60
           M K KGE+  KSAINEVVTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R
Sbjct: 1   MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVR 60

Query: 61  VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
           +DTRLNK +WSKG+R+ PF          NDDEDS +KL+T VTYVPV++ K LQTENV+
Sbjct: 61  IDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120

Query: 121 ASQE 124
           +S +
Sbjct: 121 SSDD 124


>AE013599-888|AAF58920.1|  124|Drosophila melanogaster CG1821-PB,
           isoform B protein.
          Length = 124

 Score =  177 bits (430), Expect = 5e-45
 Identities = 80/124 (64%), Positives = 99/124 (79%)

Query: 1   MAKPKGERTGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60
           M K KGE+  KSAINEVVTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R
Sbjct: 1   MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVR 60

Query: 61  VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
           +DTRLNK +WSKG+R+ PF          NDDEDS +KL+T VTYVPV++ K LQTENV+
Sbjct: 61  IDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120

Query: 121 ASQE 124
           +S +
Sbjct: 121 SSDD 124


>AE013599-887|AAM71073.1|  124|Drosophila melanogaster CG1821-PA,
           isoform A protein.
          Length = 124

 Score =  177 bits (430), Expect = 5e-45
 Identities = 80/124 (64%), Positives = 99/124 (79%)

Query: 1   MAKPKGERTGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIR 60
           M K KGE+  KSAINEVVTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R
Sbjct: 1   MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVR 60

Query: 61  VDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVD 120
           +DTRLNK +WSKG+R+ PF          NDDEDS +KL+T VTYVPV++ K LQTENV+
Sbjct: 61  IDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTYVPVSTFKNLQTENVE 120

Query: 121 ASQE 124
           +S +
Sbjct: 121 SSDD 124


>AY095051-1|AAM11379.1| 1838|Drosophila melanogaster LD40310p
           protein.
          Length = 1838

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 12  SAINEVVTREYTVNLHKRLHGVGFKKRA 39
           S+I+E VT EY  +LH   HG GF  ++
Sbjct: 554 SSIDEDVTVEYGADLHTMDHGSGFPTKS 581


>AE014134-1014|AAN10569.1| 1838|Drosophila melanogaster CG9088-PB,
           isoform B protein.
          Length = 1838

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 12  SAINEVVTREYTVNLHKRLHGVGFKKRA 39
           S+I+E VT EY  +LH   HG GF  ++
Sbjct: 554 SSIDEDVTVEYGADLHTMDHGSGFPTKS 581


>AE014134-1013|AAF52319.1| 1838|Drosophila melanogaster CG9088-PA,
           isoform A protein.
          Length = 1838

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 12  SAINEVVTREYTVNLHKRLHGVGFKKRA 39
           S+I+E VT EY  +LH   HG GF  ++
Sbjct: 554 SSIDEDVTVEYGADLHTMDHGSGFPTKS 581


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,195,892
Number of Sequences: 52641
Number of extensions: 169889
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 7
length of query: 124
length of database: 24,830,863
effective HSP length: 76
effective length of query: 48
effective length of database: 20,830,147
effective search space: 999847056
effective search space used: 999847056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)