Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000959-TA|BGIBMGA000959-PA|IPR000054|Ribosomal protein
L31e
(124 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo... 128 1e-30
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C) 125 8e-30
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A) 125 8e-30
At4g17250.1 68417.m02594 expressed protein 28 1.6
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse... 28 1.6
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse... 28 1.6
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p... 27 4.8
At3g43960.1 68416.m04706 cysteine proteinase, putative contains ... 26 6.4
At4g23370.1 68417.m03370 hypothetical protein predicted proteins... 26 8.4
At4g19680.1 68417.m02890 iron-responsive transporter (IRT2) memb... 26 8.4
At1g27720.1 68414.m03388 transcription initiation factor IID (TF... 26 8.4
>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
ribosomal protein L31, Nicotiana glutinosa, U23784
Length = 119
Score = 128 bits (308), Expect = 1e-30
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 2/112 (1%)
Query: 11 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLW 70
K EVVTREYT+NLH+RLH FKK+AP+AIKEIRKFAEK+MGT D+RVD +LNK +W
Sbjct: 5 KGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIW 64
Query: 71 SKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120
SKG+R P NDDED+ + F+LVT +P + GL T+ ++
Sbjct: 65 SKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116
>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
Length = 119
Score = 125 bits (302), Expect = 8e-30
Identities = 59/112 (52%), Positives = 76/112 (67%), Gaps = 2/112 (1%)
Query: 11 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLW 70
K EV+TREYT+NLH+RLH FKK+AP+AIKEIRKFAEK MGT D+RVD +LNK +W
Sbjct: 5 KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIW 64
Query: 71 SKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120
SKG+R P NDDED+ + F+LVT +P + GL T+ ++
Sbjct: 65 SKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116
>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
Length = 119
Score = 125 bits (302), Expect = 8e-30
Identities = 60/116 (51%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Query: 10 GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFL 69
GK EVVTREYT+NLH+RLH FKK+AP AIKEIRKFA K MGT D+RVD +LNK +
Sbjct: 4 GKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQI 63
Query: 70 WSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 123
WSKG+R P NDDED+ + F+LVT +P + GL T+ ++ +
Sbjct: 64 WSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119
>At4g17250.1 68417.m02594 expressed protein
Length = 416
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 23 TVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVD 62
TV KR + +KKR A+K+ + E++ G P ++ D
Sbjct: 169 TVPATKRFLELKYKKRYEFALKQCPSYTERRRGVPKLKED 208
>At3g19400.2 68416.m02460 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 290
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 21 EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 68
++ V K +G+G K+R + K+ KF ++ PD + L +F
Sbjct: 46 QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93
>At3g19400.1 68416.m02461 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 362
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 21 EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 68
++ V K +G+G K+R + K+ KF ++ PD + L +F
Sbjct: 46 QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93
>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
protease, putative contains similarity to cysteine
proteinase RD21A (thiol protease) GI:435619, SP:P43297
from [Arabidopsis thaliana]
Length = 452
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 7 ERTGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLN 66
E T A + + V K +G+G K+R K+ KF E+ P+ + L
Sbjct: 31 ETTRNEAEARRMYERWLVENRKNYNGLGEKERRFEIFKDNLKFVEEHSSIPNRTYEVGLT 90
Query: 67 KF 68
+F
Sbjct: 91 RF 92
>At3g43960.1 68416.m04706 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol
protease) GI:435619, SP:P43297 from [Arabidopsis
thaliana]
Length = 376
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 16 EVVT--REYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 68
EV+T ++ V K +G+G K+R + K+ K E+ P+ + LNKF
Sbjct: 36 EVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYERGLNKF 90
>At4g23370.1 68417.m03370 hypothetical protein predicted proteins,
Arabidopsis thaliana contains Pfam profile PF03080:
Arabidopsis proteins of unknown function
Length = 1021
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 93 EDSAHKLFTLVTYVPVASIKGLQTENVD 120
ED ++L L+ Y+ IK QTEN D
Sbjct: 30 EDDENELDRLLNYINKPPIKSFQTENGD 57
>At4g19680.1 68417.m02890 iron-responsive transporter (IRT2) member
of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family,
PMID:11500563
Length = 257
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 9 TGKSAINEVVTREYTVNLHKRLHGVG 34
TGK+++ V EY ++ K +H VG
Sbjct: 147 TGKNSVGPVPDEEYGIDQEKAIHMVG 172
>At1g27720.1 68414.m03388 transcription initiation factor IID
(TFIID) component TAF4 family protein contains Pfam
profile PF05236: Transcription initiation factor TFIID
component TAF4 family
Length = 682
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 67 KFLWSKGVRNVPFXXXXXXXXXXNDD-EDSAHKLFTLVTYVPVASIKGLQTENVDAS 122
++L +GV NVP NDD E + K+ + +S+ T +D+S
Sbjct: 321 RYLVQQGVTNVPLKQKNAIPISSNDDLEKQSSKMGLFTSTTSASSVFPSMTTQLDSS 377
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,150
Number of Sequences: 28952
Number of extensions: 84914
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 11
length of query: 124
length of database: 12,070,560
effective HSP length: 73
effective length of query: 51
effective length of database: 9,957,064
effective search space: 507810264
effective search space used: 507810264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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