Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000958-TA|BGIBMGA000958-PA|IPR002524|Cation efflux
protein, IPR009061|Putative DNA binding
         (436 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    26   0.45 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    26   0.45 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   4.2  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   4.2  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   9.8  
AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esteras...    22   9.8  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 0.45
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 214 YFVLGGAVVSEGATLMVALSAIRKGAREA 242
           + VLG AVVS+G TL +  S I+K    A
Sbjct: 70  FVVLGAAVVSKGTTLFMT-SQIKKNVTRA 97


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 0.45
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 214 YFVLGGAVVSEGATLMVALSAIRKGAREA 242
           + VLG AVVS+G TL +  S I+K    A
Sbjct: 70  FVVLGAAVVSKGTTLFMT-SQIKKNVTRA 97


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 292 ALGSILVGTILGGVASFIIL 311
           A+   LV +ILGGV ++II+
Sbjct: 629 AINYTLVFSILGGVTTYIII 648


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 292 ALGSILVGTILGGVASFIIL 311
           A+   LV +ILGGV ++II+
Sbjct: 354 AINYTLVFSILGGVTTYIII 373


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 297 LVGTILGGVASFIILS 312
           L+G I G V S+II+S
Sbjct: 367 LLGFIFGSVTSYIIIS 382


>AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 116 GCNFLFKLCAWFYTG 130
           GCNFL  +  W + G
Sbjct: 96  GCNFLKPVMVWIHGG 110


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.139    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,604
Number of Sequences: 317
Number of extensions: 3733
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 436
length of database: 114,650
effective HSP length: 59
effective length of query: 377
effective length of database: 95,947
effective search space: 36172019
effective search space used: 36172019
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)