Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000958-TA|BGIBMGA000958-PA|IPR002524|Cation efflux
protein, IPR009061|Putative DNA binding
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20432| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   2e-30
SB_58769| Best HMM Match : XPA_C (HMM E-Value=0.01)                    41   0.002
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.0  
SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.2  
SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.2  
SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.2  
SB_50434| Best HMM Match : XPA_C (HMM E-Value=2.1e-05)                 29   7.4  
SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)                     29   9.8  

>SB_20432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score =  130 bits (315), Expect = 2e-30
 Identities = 62/124 (50%), Positives = 88/124 (70%)

Query: 216 VLGGAVVSEGATLMVALSAIRKGAREANMSLYEYVMRSSDPSVNVVLLEDTAAVAGVIVA 275
           +LGG+ V EGATL+ A++ +RK A E+ MS  EY++R  DP+   VLLED AAV GV + 
Sbjct: 195 ILGGSFVLEGATLLAAVTQVRKSANESGMSFREYLLRGRDPTAIAVLLEDGAAVTGVSLG 254

Query: 276 ASCMAISQYTGNPLPDALGSILVGTILGGVASFIILSNVGALVGRSIPHEQLDEINSVLE 335
           A C+ ++ YTG+P+ DA+GS+++G +LG VA F+I  N   L+GRSIP E+L +I  VLE
Sbjct: 255 AVCLGLTSYTGSPVFDAIGSLMIGGLLGTVAFFLIRRNADFLIGRSIPPERLRQIIEVLE 314

Query: 336 RDFM 339
            D +
Sbjct: 315 SDIV 318



 Score = 41.9 bits (94), Expect = 0.001
 Identities = 15/44 (34%), Positives = 33/44 (75%)

Query: 379 LNALLEDMKKIDTIDDVETFLLKHGENIVDMLGGEIDRIELKLR 422
           L + + +++K+ T  ++E F+L++GE ++D+LG ++DRIE  ++
Sbjct: 313 LESDIVEIQKLTTTAEMEQFMLEYGEQVIDVLGQQVDRIERNIK 356



 Score = 38.3 bits (85), Expect = 0.012
 Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 118 NFLFKLC---AWFYTGSHSLFSECIHSLADTVNQLILAYG 154
           NF   LC   A+ YTGS ++ SE IHSLAD +NQ     G
Sbjct: 158 NFAVMLCKFGAYVYTGSATMLSESIHSLADLLNQACAILG 197


>SB_58769| Best HMM Match : XPA_C (HMM E-Value=0.01)
          Length = 123

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 3  AMTEYLLKQSDLESLPKVLRRSPY-ESEPPITVYYRRDVEAKAIEIWGS 50
          A  +YLL   DL+ L    + +P  +S PP+ ++   +V++KA+E+WGS
Sbjct: 25 AKRDYLLSDEDLKELNHETKDNPINKSYPPMKIFKLSEVKSKAVEVWGS 73


>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 284 YTGNPLPDALGSILVGTILGGVASFIILSNVGALVGRSIPHEQLDE-INSVLERDFMI-R 341
           +    +PD + ++++G+ +GG+    +L+  G  +     H+Q     ++  E+ F    
Sbjct: 77  FVAKKIPDEVDAVVIGSGIGGMTCASLLAKTGKKILVLEQHDQAGGCCHTFHEKGFEFDS 136

Query: 342 AIHDVKGIDIGSNLIRYKAEVDFDGRALTRSYLEKHDLNALLEDMKK 388
            IH + G  + ++ I++  +   DG+ L  S LEKH     + DM K
Sbjct: 137 GIHYI-GEMMSNSAIKFLIDQITDGQLLW-SPLEKHYDTVAIGDMAK 181


>SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 142 LADTVNQLILAYGIHKSVQMADPDHPYGYTNMRYVSSLISGVGIFCVGSGLSFYHGVTGI 201
           L   +   ILA  ++    M+  D  YGY N+R++  L+S      +   L  +   +  
Sbjct: 49  LGQEIRNDILAKVVNSEGLMSLLDDCYGYDNLRFLERLLSKANCLDLVEMLRDWKSSSNC 108

Query: 202 LDPQPLHDF-YWAYFVLGGAVVSEGATL 228
           L+P+   +F Y+  ++      +E A+L
Sbjct: 109 LNPRLFEEFGYFPLWIKVNCTFNEFASL 136


>SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 132 HSLFSECIHSLADTVNQLILAYGIHKSVQMADPDHPYGYTNMRYVSSLISGVGIFCVGSG 191
           H+  S  I  + ++V+ L  A  + + + +  P H   +T  R VS++++ V +F    G
Sbjct: 97  HAAISVTISLMFNSVSNLS-AISLDRYLAIETPLHYRAFTTKRRVSAIVAFVWVFSTTVG 155

Query: 192 LSFYHGVTGILDPQP 206
              Y G   +  P+P
Sbjct: 156 FIPYMGWRKVRRPEP 170


>SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 98  VGLKTRSGRVVLTAIGINGCNFLFKLCAWFYTGSHSLFSECIHSLADTVNQLILAY-GIH 156
           +GL  ++ +VV  A  ++   FL  L A+F   S S   E +  +A + +Q I+   G+ 
Sbjct: 662 IGLSHKTVKVVTVARIVSDNAFLASLLAYFTKLSSSGSKETVRKVAKSPSQTIVGMDGLQ 721

Query: 157 KSVQM 161
           KS Q+
Sbjct: 722 KSAQL 726


>SB_50434| Best HMM Match : XPA_C (HMM E-Value=2.1e-05)
          Length = 830

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 10/31 (32%), Positives = 21/31 (67%)

Query: 21  LRRSPYESEPPITVYYRRDVEAKAIEIWGSK 51
           L+++P+ +   + +Y +  V A+A E+WGS+
Sbjct: 96  LKKNPHYARGDMKLYLKSQVIARAYEVWGSE 126


>SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 493

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 223 SEGATLMVALSAIRKGAREANMSLYEYVMRSSDPSVNVVLLEDTAAVAGVIVAAS-CMAI 281
           SE  +L+   S   +G     M+LY Y++         +   DT  V+G ++  S    +
Sbjct: 25  SEKVSLIRDGSPASQGKEGEKMTLYVYMLTFFAAIGGFLFGYDTGVVSGAMILISEVFHL 84

Query: 282 SQYTGNPLPDA-LGSILVGTILGGV 305
           S +    +    +G+ +VG +LGG+
Sbjct: 85  SDFWHELIVSGTIGTAIVGAVLGGI 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.139    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,200,586
Number of Sequences: 59808
Number of extensions: 503636
Number of successful extensions: 1205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1198
Number of HSP's gapped (non-prelim): 12
length of query: 436
length of database: 16,821,457
effective HSP length: 84
effective length of query: 352
effective length of database: 11,797,585
effective search space: 4152749920
effective search space used: 4152749920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)