Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000958-TA|BGIBMGA000958-PA|IPR002524|Cation efflux
protein, IPR009061|Putative DNA binding
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 33 0.079
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 30 0.73
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 29 1.3
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 28 3.0
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 28 3.0
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 27 5.2
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 5.2
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 6.8
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 6.8
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 33.1 bits (72), Expect = 0.079
Identities = 23/115 (20%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 103 RSGRVVLTAIGINGCNFLFKLCAWFYTGSHSLFSECIHSLADTVNQLILAYGIHKSVQMA 162
R R++L +GI+ F ++ + S +L ++ H L D V+ L+ + + +
Sbjct: 6 RQTRIILL-LGIDVTFFFIEIITGYAIDSLALIADSFHMLNDIVSLLVALWATRLAHSTS 64
Query: 163 -DPDHPYGYTNMRYVSSLISGVGIFCVGSGLSFYHGVTGILDPQPLHDFYWAYFV 216
+P + YG+ + +L +GV + + + F + ++P + + +FV
Sbjct: 65 HEPKYTYGWQRAEILGALSNGVFLIALCMFI-FMEAIERFIEPPSVSNPTLMFFV 118
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 29.9 bits (64), Expect = 0.73
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 301 ILGGVASFIILSNVGALVGRSIPHEQLDEINSVLER-DFMIRAIHDVKGIDIGSNLIRYK 359
ILGG + + G ++ R IP ++ D + +E+ D ++ ++ + N+ +
Sbjct: 56 ILGGRVKTLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPE 115
Query: 360 A--EVDFDGRALTRSYLEKHDLNALLEDMKKIDTIDD 394
A E+D G L R+ + H +L D T D
Sbjct: 116 AVEEIDIGGVTLLRAAAKNHARVTILSDPADYATFTD 152
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 297 LVGTILGGVASFIILSNVGALVGRSIPHEQLDEINSVLERDFMIRAIHDVKGID-IGSNL 355
+ G +L G S+ LSN GALV ++ DE++S+L+ + I+ +G D IG+ L
Sbjct: 142 VAGNVLTG--SYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTIN--RGSDVIGAGL 197
Query: 356 I 356
+
Sbjct: 198 V 198
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 289 LPDALGSILVGTILGGVASFIILSNVGALVGRSIPHEQL 327
L D +G+ VG+ +GG+ FI L + A V I +E L
Sbjct: 134 LVDVVGADNVGSTMGGIFGFISLGEIIAPVFGGIVYESL 172
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 335 ERDFMIRAIHDVKGIDIGSNLIRYKAEVDFD------GRALTRSYLEKHDLN 380
E + ++R++ D++ ++ ++ YK E +FD + LT++Y K DL+
Sbjct: 187 EDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSNDYFTNKILTKTYYYKDDLS 238
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 380 NALLEDMKKIDTIDDVETFLLKHGENIVDMLGGEIDRIELKLRK 423
N LLE +++ ++ +T + ENI+ EI R+E ++ K
Sbjct: 114 NVLLEQKEQLQQLEKRQTDQVSARENILQRETSEIQRLEREIEK 157
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 5.2
Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 10/149 (6%)
Query: 197 GVTGILDPQPLHDFYWAYFVLGGAVV-----SEGATLMVALSAIR-KGAREANMSLYEYV 250
G+ +P P+ W Y + G VV G T+ + A++ N S+ +
Sbjct: 181 GLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVL 240
Query: 251 MRSSDPSVNVVLLEDTAAVAGVIVAASCMAISQYTGNPLPD-ALGSILVGTILGGVASFI 309
+ S + + E+ + +I + A+ Y G P + A + I+G +
Sbjct: 241 VVSPTRELAIQTYEN---LNSLIQGTNLKAVVVYGGAPKSEQARAAKNASVIIGTPGRLL 297
Query: 310 ILSNVGALVGRSIPHEQLDEINSVLERDF 338
L N G++ + + LDE + +L+ F
Sbjct: 298 DLINDGSIDCSQVGYLVLDEADRMLDTGF 326
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 6.8
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 136 SECIHSLADTVN-------QLILAYGIHKSVQMADPDHPYGYTNMRYVSSLISGVG--IF 186
SEC S+ D ++ +L Y + KS + + P+ Y +V L+ G G F
Sbjct: 146 SECYDSVQDQLDANDYEAKNQVLGYWLQKSKEQLNAKVPHHYPKASFVLWLLRGFGFSFF 205
Query: 187 CVGSGL-SFYHGVTGILDPQPLHDFYW---AYFVLGGA 220
+ S + YH + L P + + + +YF+L G+
Sbjct: 206 YLQSIVWHLYHSMIISLLPDGIRNLFLKAISYFLLDGS 243
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 6.8
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 220 AVVSEGATLMVALSAIRKGAREANMSLYEYVMRSSDPSVNVVLLEDTAAVAGVIVAASCM 279
A + E M+A+S+ A + S+ D +VN + L++ + A +A
Sbjct: 224 AALEEALNCMIAISSYLAKASVSVQSVLPAFTECMDLTVNCIALDEVSEKAMNCLADLLA 283
Query: 280 AISQYTGNPLPDALGSILVG 299
S + P + L +IL G
Sbjct: 284 NYSNFITQPTIERLWTILTG 303
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.139 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,913
Number of Sequences: 5004
Number of extensions: 74188
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 11
length of query: 436
length of database: 2,362,478
effective HSP length: 75
effective length of query: 361
effective length of database: 1,987,178
effective search space: 717371258
effective search space used: 717371258
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)
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