Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000958-TA|BGIBMGA000958-PA|IPR002524|Cation efflux
protein, IPR009061|Putative DNA binding
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0240 - 13228046-13228170,13228247-13228307,13229301-132293... 176 2e-44
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 36 0.084
01_01_0192 - 1672837-1673181,1673255-1673485,1673854-1674099,167... 35 0.15
08_02_0707 - 20212190-20214592 33 0.34
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 33 0.59
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779... 30 4.2
06_02_0166 + 12522172-12522890,12523567-12524596 29 5.5
03_05_0236 - 22225202-22225723 29 7.3
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300 29 7.3
01_06_1328 + 36347963-36347984,36348609-36348764,36349083-363492... 29 7.3
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 29 9.7
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 29 9.7
>04_03_0240 -
13228046-13228170,13228247-13228307,13229301-13229368,
13229979-13230051,13230130-13230231,13231473-13231592,
13231795-13231913,13231990-13232047,13232152-13232208,
13232719-13232851,13233534-13233591,13234592-13234601,
13239996-13240961
Length = 649
Score = 176 bits (429), Expect = 2e-44
Identities = 89/235 (37%), Positives = 144/235 (61%), Gaps = 3/235 (1%)
Query: 203 DPQPLHDFYWAYFVLGGAVVSEGATLMVALSAIRKGAREANMSLYEYVMRSSDPSVNVVL 262
D P + ++A V+GG+ + EGA+L+VA+ A+RKGA MS+ +Y+ R DP+ V+
Sbjct: 406 DANPPENIHYAALVIGGSFLIEGASLLVAIKAVRKGAAAEGMSIRDYIWRGHDPTSVAVM 465
Query: 263 LEDTAAVAGVIVAASCMAISQYTGNPLPDALGSILVGTILGGVASFIILSNVGALVGRSI 322
ED AAV G+ +A + + Q TGN + D +GSI+VG +LG VA F+I N AL+GR+I
Sbjct: 466 TEDGAAVTGLAIAGASLVAVQTTGNAMYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAI 525
Query: 323 PHEQLDEINSVLERDFMIRAIHDVKGIDIGSNLIRYKAEVDFDGRALTRSYLEKHDLNAL 382
+ + L+ D ++ A++D K IG R+KAE+DF+G L ++YLE+
Sbjct: 526 DDHDMQRVLEFLKADPVVDALYDCKSEVIGPGFFRFKAEIDFNGVVLVQNYLERTGRGEW 585
Query: 383 LEDMKKID-TIDDVETF--LLKHGENIVDMLGGEIDRIELKLRKKFPQIRHCDLE 434
+ ++ + DD E + +GE++V+ LG E+DR+E +++K P I+H D+E
Sbjct: 586 AKQFREASLSKDDTELIRVMSNYGEDVVEALGYEVDRLESEIQKIVPGIKHVDIE 640
Score = 40.3 bits (90), Expect = 0.003
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 104 SGRVVLTAIGINGCNFLFKLCAWFYTGSHSLFSECIHSLADTVNQLI 150
S R V TA+ N F K W T SH + +E +HS+AD NQ++
Sbjct: 345 SHRAVNTALWCNFLVFSLKFGVWLSTSSHVMLAELVHSVADFANQVL 391
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 35.5 bits (78), Expect = 0.084
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 83 RREMSHTRSKDNVEEVGLKTRSGRVVLTAIGINGCNFLFKLCAWFYTGSHSLFSECIHSL 142
R + H+ + EEVG + S R+ + + + K + +GS ++ ++ HSL
Sbjct: 56 RGHVGHSHHHHHGEEVGGEA-SERIFRLGLAADVVLTVGKAVTGYLSGSTAIAADAAHSL 114
Query: 143 ADTVNQLILAYGIHKSVQMADPDHPYGYTNMRYVSSLISGVGIFCVGSGLSFY 195
+D V + + D +HPYG+ + +L + G++++
Sbjct: 115 SDIVLSGVALLSYKAAKAPRDKEHPYGHGKFESLGALGISSMLLVTAGGIAWH 167
>01_01_0192 -
1672837-1673181,1673255-1673485,1673854-1674099,
1674247-1674362,1675735-1675891
Length = 364
Score = 34.7 bits (76), Expect = 0.15
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 291 DALGSILVGTILGGVASFIILSNVGALVGRSIPHEQLDEINSVL-ERDFMIRAIHDVKGI 349
D +G+IL+ + ++ NVG L+GRS P E L ++ ++ IR I V+
Sbjct: 244 DPVGAILIAVYTITTWARTVVENVGTLIGRSAPAEYLTKLTYLIWNHHEEIRHIDTVRAY 303
Query: 350 DIGSNLIRYKAEVDFDGRALTRSYLEKHDLNALLEDMKKIDTIDDVE 396
G++ Y EVD HD+ L++ K++ + +VE
Sbjct: 304 TFGTH---YFVEVDIVLPG-DMPLSHAHDIGESLQE--KLEQLPEVE 344
>08_02_0707 - 20212190-20214592
Length = 800
Score = 33.5 bits (73), Expect = 0.34
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 1/124 (0%)
Query: 100 LKTRSGRVVLTAIGINGCNFLFKLCAWFYTGSHSLFSECIHSLADTVNQLILAYGIHKSV 159
L R R + + IN + + F + S L S+ H L D I Y + +
Sbjct: 355 LNERKSRKIAAFLLINTAYMFVEFTSGFMSDSLGLISDACHMLFDCAALAIGLYASYIAR 414
Query: 160 QMADPDHPYGYTNMRYVSSLISGVGIFCVGSGLSFYHGVTGILDPQPLHDFYWAYFVLGG 219
A+ + YG +S ++ V + VG+ L IL+P+ + +GG
Sbjct: 415 LPANGLYNYGRGRFEVLSGYVNAVFLVLVGA-LIVLESFERILEPREISTSSLLTVSIGG 473
Query: 220 AVVS 223
VV+
Sbjct: 474 LVVN 477
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 32.7 bits (71), Expect = 0.59
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 291 DALGSILVGTILGGVASFIILSNVGALVGRSIPHEQLDEINSVL-ERDFMIRAIHDVKGI 349
D +G+I++ S +L NV +LVG+S E L ++ + +R I V+
Sbjct: 293 DPVGAIILAIYTIRTWSMTVLENVHSLVGQSASPEYLQKLTYLCWNHHKAVRHIDTVRAY 352
Query: 350 DIGSNLIRYKAEVDFDGRALTRSYLEKHDLNALLEDMKKIDTIDDVE 396
GS+ Y EVD + E HD+ L++ K++ + ++E
Sbjct: 353 TFGSH---YFVEVDI-VLPSSMPLQEAHDIGEALQE--KLERLPEIE 393
>08_02_1170 +
24876197-24877070,24877563-24877606,24877805-24877900,
24877999-24878544
Length = 519
Score = 29.9 bits (64), Expect = 4.2
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 129 TGSHSLFSECIHSLADTVNQLILAYGIHKSVQMADPDHPYGYTNMRYVSSLISGVGIFCV 188
TG+ +L S IH+ A TV + +A GI + D D G R+ +++ GV
Sbjct: 149 TGTTALVSMWIHNTACTVMMMPVATGILQRFPRGDIDDGGGQEVRRFSKAVVLGVVYASA 208
Query: 189 GSGLSFYHGVTGI 201
G++ G TG+
Sbjct: 209 IGGMATLTG-TGV 220
>06_02_0166 + 12522172-12522890,12523567-12524596
Length = 582
Score = 29.5 bits (63), Expect = 5.5
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 172 NMRYVSSLISGVGIFCVGSGLSFYHGVTGILDPQPLHDFYWAYFVLGGAVVSEGATLMVA 231
+M+ L+S V + Y G LD D W ++ GAV A
Sbjct: 174 SMQGFGILVSSAVTMAVAAAFDHYTGYPAPLDTPECADLAWRIILMAGAV--PAALTYYW 231
Query: 232 LSAIRKGAREANMSLYEYVMRSSDPSVNVVLLE-DTAAVAGVIVAASCMAISQYTGNPLP 290
++ + AR + + V ++D + VL + D AAVA VAA+ ++ T P P
Sbjct: 232 RMSMPETARYTALVERDVVKATND--IGRVLADLDLAAVAEEEVAAAALSPPPVTTPPPP 289
>03_05_0236 - 22225202-22225723
Length = 173
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 267 AAVAGVIVAASCMAISQYTGNPLPDALGSILVGTILGGVASFIILSNVGALVGRSIPHEQ 326
A + G I ++ + +S G+PLP +I+G + F+ + A G+ IP +
Sbjct: 93 AGLGGHIKVSTAVEMSLVAGSPLPSGSAFADPPSIMGPIVKFLASKRIAA-AGQRIPLLR 151
Query: 327 LDE 329
L E
Sbjct: 152 LQE 154
>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
Length = 623
Score = 29.1 bits (62), Expect = 7.3
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 223 SEGATLMVALSAIRKGAREANMSLYEYVMRSSDPSVNVVLLEDTAAVAGVIVAASCMAIS 282
SEG+ V L AI +G R+ LY + R ++ +V + + V +
Sbjct: 404 SEGSVSDVGLQAISEGCRKLESILY-FCQRMTNAAVIAMSKNCSDLVTFRLCIMGRHRPD 462
Query: 283 QYTGNPLPDALGSILV 298
+ TG P+ D G+I++
Sbjct: 463 RITGEPMDDGFGAIVM 478
>01_06_1328 +
36347963-36347984,36348609-36348764,36349083-36349261,
36349347-36349442,36349525-36349594,36349635-36349705,
36350654-36351286
Length = 408
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 293 LGSILVGTILGGVASFIILSNVGALVGRSI-PHEQLDEINSVLER-DFMIRAIHDVKGID 350
L I G I G+A+++ L+++ ++ E LDE+ +ER D RA+ D+KG++
Sbjct: 161 LKEIYEGNIEEGIAAYLYLNSLHLHTEMTVYDEEHLDEVKDPIERPDNAARAV-DLKGLE 219
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 28.7 bits (61), Expect = 9.7
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 329 EINSVLERDFMIRAIHDVKGIDIGSNLIRYKAEVDFDGRALT--------RSYLEKHDLN 380
E+ +LE F++ + V+ D ++ +D DG + R K+D
Sbjct: 742 EMLKLLESHFLMSEVSPVEIDDNHGGVVDPDPSLDADGNSEASMVMSSEKRKKSRKYDQK 801
Query: 381 ALLEDMKKIDTIDDVETFLLKHGENIVDMLGGEIDRIELKLRKKFPQIR 429
AL ++ ID+ L+ N+++ L E+D + K+ F +IR
Sbjct: 802 ALQTNLDDYAAIDNHNISLMYLRRNLLEELISEVDTFDEKVLGSFVRIR 850
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 28.7 bits (61), Expect = 9.7
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 323 PHEQLDEINSVLERDFMIRAIHDVKGIDIGSNLIRYKAEVDFDGRALTRSYLEKHDLNAL 382
P L EIN +L F +I DVK + +GS+L D + Y+E HDL +
Sbjct: 406 PLTSLREINILLS--FHHPSIVDVKEVVVGSSL---------DSIFMVMEYME-HDLKGV 453
Query: 383 LEDMKKIDTIDDVETFLLKHGENI 406
+E MK+ + +V+ +L+ E +
Sbjct: 454 MEAMKQPYSQSEVKCLMLQLLEGV 477
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.139 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,885,027
Number of Sequences: 37544
Number of extensions: 487115
Number of successful extensions: 1095
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1085
Number of HSP's gapped (non-prelim): 15
length of query: 436
length of database: 14,793,348
effective HSP length: 84
effective length of query: 352
effective length of database: 11,639,652
effective search space: 4097157504
effective search space used: 4097157504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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