Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000958-TA|BGIBMGA000958-PA|IPR002524|Cation efflux
protein, IPR009061|Putative DNA binding
(436 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical ... 284 7e-77
AF016439-4|AAV28339.1| 489|Caenorhabditis elegans Hypothetical ... 46 7e-05
AF016439-3|AAB65899.2| 467|Caenorhabditis elegans Hypothetical ... 45 1e-04
U00063-3|AAK18959.2| 446|Caenorhabditis elegans Hypothetical pr... 37 0.032
U40944-2|ABC71812.1| 306|Caenorhabditis elegans Hypothetical pr... 31 2.1
U40944-1|AAA81718.3| 341|Caenorhabditis elegans Hypothetical pr... 31 2.1
AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical ... 31 2.1
AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical ... 30 3.7
AL117200-15|CAB55049.2| 609|Caenorhabditis elegans Hypothetical... 29 6.4
>AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical
protein Y71H2AM.9 protein.
Length = 443
Score = 284 bits (697), Expect = 7e-77
Identities = 158/379 (41%), Positives = 224/379 (59%), Gaps = 18/379 (4%)
Query: 1 MRAMTEYLLKQSDLESLP---KVLRRSPYESEPPITVYYRRDVEAKAIEIWGSKXXXXXX 57
+ AM E+ LK+SDLE LP K + + + +Y +V KA+++ GS
Sbjct: 71 LSAMAEFGLKESDLEDLPSHSKPVLSLTHHGKSNHQLYTLTEVYHKALKVHGS------- 123
Query: 58 XXXXXXXXXXXXQDVFTVKRRLRDYRREMSHTRSKDNVEEVGLKTRSGRVVLTAIGINGC 117
+ + +++ L D R R + VE + RVV A +N C
Sbjct: 124 ----TEALEAHRRPLVAMRKELTDAER----MRMRMRVETTNQHKGADRVVAIAFTLNLC 175
Query: 118 NFLFKLCAWFYTGSHSLFSECIHSLADTVNQLILAYGIHKSVQMADPDHPYGYTNMRYVS 177
+ K A + TGS SLF+E IHS DT NQLIL GI S + D PYGY NMRYV+
Sbjct: 176 DMAMKFTAAYLTGSKSLFAEAIHSAMDTCNQLILLLGIRYSAKNPDLLFPYGYGNMRYVT 235
Query: 178 SLISGVGIFCVGSGLSFYHGVTGILDPQPLHDFYWAYFVLGGAVVSEGATLMVALSAIRK 237
SLISG GI G GLS YHG++G+L P+PL +AY+ L ++ +G + + A +
Sbjct: 236 SLISGCGIMAFGCGLSMYHGISGLLHPEPLEPLTYAYYALFMSLCFQGTSAITAYREVFA 295
Query: 238 GAREANMSLYEYVMRSSDPSVNVVLLEDTAAVAGVIVAASCMAISQYTGNPLPDALGSIL 297
A++AN+S++ YV S+DPS+NVVLLEDTAAV GV +A +++S + +P+PD GSI+
Sbjct: 296 KAKKANISIWNYVRTSADPSLNVVLLEDTAAVTGVGIALCAISLSSFLNSPIPDCCGSIV 355
Query: 298 VGTILGGVASFIILSNVGALVGRSIPHEQLDEINSVLERDFMIRAIHDVKGIDIGSNLIR 357
+G +LG VASFII +N LVGRS+P D+I + L D MIR++HDVK +G R
Sbjct: 356 IGALLGTVASFIIRTNAAHLVGRSLPQRITDDIVARLNNDPMIRSVHDVKATCLGVEQSR 415
Query: 358 YKAEVDFDGRALTRSYLEK 376
+KAE+DFDGR +TR+YL++
Sbjct: 416 FKAELDFDGRMITRAYLQE 434
>AF016439-4|AAV28339.1| 489|Caenorhabditis elegans Hypothetical
protein R02F11.3b protein.
Length = 489
Score = 45.6 bits (103), Expect = 7e-05
Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 23/331 (6%)
Query: 72 VFTVKRRLRDYRRE-MSHTRSKD-NVEEV--GLKTRSGRVVLTAIGINGCNFLFKLCAWF 127
+F V R R+ R++ M T +++ +V+E + R+ + +N + K+ A
Sbjct: 155 IFDVPRSPRNPRKKPMERTDTEEKSVDEKKDDESNTAARMANITLAVNFLLMIAKVVASV 214
Query: 128 YTGSHSLFSECIHSLADTVNQLILAYGIHKSVQMADPD-HPYGYTNMRYVSSLISGVGIF 186
+GS S+ S + S+ D + L+++ + ++ DP +P G T + +S ++ V I
Sbjct: 215 LSGSMSIISSMVDSVVDITSGLVISLS-ERMIKKRDPYLYPRGRTRLEPLSLILISV-IM 272
Query: 187 CVGSGLSFYHGVTGILDPQPLHDFYWAYFVLGGAVVSEGATLMVALSAIRKGAREANMSL 246
+ S V GI D H L G + + I +SL
Sbjct: 273 GMASIQLIIASVRGIHDGIQFH--------LYGIGEEPKLNVTITSVVIMVSTVLVKLSL 324
Query: 247 YEYVMRSSDPSVNVVLLEDTAAVAGVIVAASCMAISQYTGNPLPDALGSILVGTILGGVA 306
Y + R +PSVNV+ ++ VA C + D G+I+V +
Sbjct: 325 YLFCKRYKEPSVNVLAMDHRNDCISNTVALICAWLGTKYSYYF-DPAGAIVVSMYILYTW 383
Query: 307 SFIILSNVGALVGRSIPHEQLDEINSV-LERDFMIRAIHDVKGIDIGSNLIRYKAEVDFD 365
++ L G++ E ++ I V L+ D I I V GS + + + D
Sbjct: 384 VQTGREHLAKLSGKTAEPEFINRIIKVCLDHDARISHIDTVYVYHFGSKFL-VEVHIVLD 442
Query: 366 GRALTRSYLEKHDLNALLEDMKKIDTIDDVE 396
+ + E HD++ L+ I+++ +VE
Sbjct: 443 ENMILK---ESHDISETLQ--SNIESLPEVE 468
>AF016439-3|AAB65899.2| 467|Caenorhabditis elegans Hypothetical
protein R02F11.3a protein.
Length = 467
Score = 44.8 bits (101), Expect = 1e-04
Identities = 68/322 (21%), Positives = 129/322 (40%), Gaps = 20/322 (6%)
Query: 77 RRLRDYRREMSHTRSKDNVEEVGLKTRSGRVVLTAIGINGCNFLFKLCAWFYTGSHSLFS 136
+ ++ R + +S D ++ T + R+ + +N + K+ A +GS S+ S
Sbjct: 143 KHIKPMERTDTEEKSVDEKKDDESNT-AARMANITLAVNFLLMIAKVVASVLSGSMSIIS 201
Query: 137 ECIHSLADTVNQLILAYGIHKSVQMADPD-HPYGYTNMRYVSSLISGVGIFCVGSGLSFY 195
+ S+ D + L+++ + ++ DP +P G T + +S ++ V I + S
Sbjct: 202 SMVDSVVDITSGLVISLS-ERMIKKRDPYLYPRGRTRLEPLSLILISV-IMGMASIQLII 259
Query: 196 HGVTGILDPQPLHDFYWAYFVLGGAVVSEGATLMVALSAIRKGAREANMSLYEYVMRSSD 255
V GI D H L G + + I +SLY + R +
Sbjct: 260 ASVRGIHDGIQFH--------LYGIGEEPKLNVTITSVVIMVSTVLVKLSLYLFCKRYKE 311
Query: 256 PSVNVVLLEDTAAVAGVIVAASCMAISQYTGNPLPDALGSILVGTILGGVASFIILSNVG 315
PSVNV+ ++ VA C + D G+I+V + ++
Sbjct: 312 PSVNVLAMDHRNDCISNTVALICAWLGTKYSYYF-DPAGAIVVSMYILYTWVQTGREHLA 370
Query: 316 ALVGRSIPHEQLDEINSV-LERDFMIRAIHDVKGIDIGSNLIRYKAEVDFDGRALTRSYL 374
L G++ E ++ I V L+ D I I V GS + + + D + +
Sbjct: 371 KLSGKTAEPEFINRIIKVCLDHDARISHIDTVYVYHFGSKFL-VEVHIVLDENMILK--- 426
Query: 375 EKHDLNALLEDMKKIDTIDDVE 396
E HD++ L+ I+++ +VE
Sbjct: 427 ESHDISETLQ--SNIESLPEVE 446
>U00063-3|AAK18959.2| 446|Caenorhabditis elegans Hypothetical
protein F56C9.3 protein.
Length = 446
Score = 36.7 bits (81), Expect = 0.032
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 12/159 (7%)
Query: 96 EEVGLKTRSGRVVLTAIGINGCNFLFKLCAWFYTGSHSLFSECIHSLADTVNQLILAYGI 155
EE+ L + R+ + +N L K+ A + +GS S+ S + S+ D + +L+
Sbjct: 125 EEIKLTKAAARLAHITLFVNLVLMLAKIFASYLSGSMSIISSMVDSVVDLTSGAVLSIS- 183
Query: 156 HKSVQMADP-DHPYGYTNMRYVS----SLISGV-GIFCVGSGLSFYH--GVTGILDPQPL 207
+ ++ DP +P G T + +S S+I G+ + + S + H V GI DP
Sbjct: 184 SRMIRKRDPYQYPRGRTRVEPLSLILISVIMGMASVQLIISSVRRIHDAAVYGIKDP--- 240
Query: 208 HDFYWAYFVLGGAVVSEGATLMVALSAIRKGAREANMSL 246
+ W + G+ ++ TL + + + +SL
Sbjct: 241 INVSWPTIAIMGSTIAVKLTLFIICQKYKSNSSIKVLSL 279
>U40944-2|ABC71812.1| 306|Caenorhabditis elegans Hypothetical
protein PDB1.1b protein.
Length = 306
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/78 (19%), Positives = 37/78 (47%)
Query: 106 RVVLTAIGINGCNFLFKLCAWFYTGSHSLFSECIHSLADTVNQLILAYGIHKSVQMADPD 165
R+ I +N + K +++GS ++ + + S D + +++ Y +K +M
Sbjct: 25 RITTLTIILNVSLIIAKSIVAYFSGSLAILASVVDSFMDITSGVVVWYACYKIEKMNKEQ 84
Query: 166 HPYGYTNMRYVSSLISGV 183
+P G + ++ +I G+
Sbjct: 85 YPVGMRKLEPLTVVIVGM 102
>U40944-1|AAA81718.3| 341|Caenorhabditis elegans Hypothetical
protein PDB1.1a protein.
Length = 341
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/78 (19%), Positives = 37/78 (47%)
Query: 106 RVVLTAIGINGCNFLFKLCAWFYTGSHSLFSECIHSLADTVNQLILAYGIHKSVQMADPD 165
R+ I +N + K +++GS ++ + + S D + +++ Y +K +M
Sbjct: 60 RITTLTIILNVSLIIAKSIVAYFSGSLAILASVVDSFMDITSGVVVWYACYKIEKMNKEQ 119
Query: 166 HPYGYTNMRYVSSLISGV 183
+P G + ++ +I G+
Sbjct: 120 YPVGMRKLEPLTVVIVGM 137
>AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical
protein Y39E4A.2b protein.
Length = 410
Score = 30.7 bits (66), Expect = 2.1
Identities = 50/270 (18%), Positives = 104/270 (38%), Gaps = 10/270 (3%)
Query: 87 SHTRSKDNVEEVGLKTRSGRVVLTAIGINGCNFLFKLCAWFYTGSHSLFSECIHSLADTV 146
+H S D + G R+ +V+ ++ + F+ S ++ ++ H L+D +
Sbjct: 86 AHKHSHDEKYQKG--RRAEKVLWAVAALSAVFIAAEFVGGFWAQSLAIMTDAGHMLSDLL 143
Query: 147 NQLILAYGIHKSVQMADPDHPYGYTNMRYVSSLISGVGIFCVGSGLSFYHGVTGILDPQP 206
+ +I + I + A +GY + +L S V I V + + + I++ +
Sbjct: 144 SFIISIFAIRCARLPASKRLSFGYERAEVLGALTS-VIILWVLTTVLVVVAIQRIVNNEH 202
Query: 207 LHDFYWAYFVLG-GAVVSEGATLMVALSAIRKGAREANMSLYEYVMRSSDPSVNVVLLE- 264
D G G + + L++ G S + + + +V L+
Sbjct: 203 EVDADVMLITAGVGVLFNIVMGLVLHFGTGGHGHTHGGHSSHGHAHDGKNVNVRAALIHV 262
Query: 265 --DTAAVAGVIVAASCMAISQYTGNPLPDALGSILVGTILGGVASFIILSNVGALVGRSI 322
D GV++AA I ++TG L D + + L I+ ++ L+ +
Sbjct: 263 IGDLVQSIGVLIAA---LIIRFTGWTLADPICTFLFSIIVLFTTVTVMRDIFFVLMEATP 319
Query: 323 PHEQLDEINSVLERDFMIRAIHDVKGIDIG 352
H L ++ L ++ +HD+ IG
Sbjct: 320 SHYDLSDVKKALSALEGVKGVHDLHLWSIG 349
>AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical
protein Y39E4A.2a protein.
Length = 391
Score = 29.9 bits (64), Expect = 3.7
Identities = 50/268 (18%), Positives = 104/268 (38%), Gaps = 10/268 (3%)
Query: 89 TRSKDNVEEVGLKTRSGRVVLTAIGINGCNFLFKLCAWFYTGSHSLFSECIHSLADTVNQ 148
T S + E+ G R+ +V+ ++ + F+ S ++ ++ H L+D ++
Sbjct: 69 TDSASSREDTG--RRAEKVLWAVAALSAVFIAAEFVGGFWAQSLAIMTDAGHMLSDLLSF 126
Query: 149 LILAYGIHKSVQMADPDHPYGYTNMRYVSSLISGVGIFCVGSGLSFYHGVTGILDPQPLH 208
+I + I + A +GY + +L S V I V + + + I++ +
Sbjct: 127 IISIFAIRCARLPASKRLSFGYERAEVLGALTS-VIILWVLTTVLVVVAIQRIVNNEHEV 185
Query: 209 DFYWAYFVLG-GAVVSEGATLMVALSAIRKGAREANMSLYEYVMRSSDPSVNVVLLE--- 264
D G G + + L++ G S + + + +V L+
Sbjct: 186 DADVMLITAGVGVLFNIVMGLVLHFGTGGHGHTHGGHSSHGHAHDGKNVNVRAALIHVIG 245
Query: 265 DTAAVAGVIVAASCMAISQYTGNPLPDALGSILVGTILGGVASFIILSNVGALVGRSIPH 324
D GV++AA I ++TG L D + + L I+ ++ L+ + H
Sbjct: 246 DLVQSIGVLIAA---LIIRFTGWTLADPICTFLFSIIVLFTTVTVMRDIFFVLMEATPSH 302
Query: 325 EQLDEINSVLERDFMIRAIHDVKGIDIG 352
L ++ L ++ +HD+ IG
Sbjct: 303 YDLSDVKKALSALEGVKGVHDLHLWSIG 330
>AL117200-15|CAB55049.2| 609|Caenorhabditis elegans Hypothetical
protein Y50E8A.6 protein.
Length = 609
Score = 29.1 bits (62), Expect = 6.4
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 228 LMVALSAIRKGAREANMSLYEYVMRSSDPSVNVVLLED-----TAAVAGVIVAASCMAIS 282
L+VAL+AIR GA+ N + +++ S VN L++D T + +V + +
Sbjct: 223 LVVALTAIRNGAKCVNHTECIGLLKDSYGKVNGALVKDHISGETYEIHSKVVVNATGPFN 282
Query: 283 QYTGNPLPDALGSILVGT--ILGGVASFIILSNVGALVGRS 321
+ + I+VG+ I VA + N G +V +S
Sbjct: 283 DHIREMADETRNKIIVGSSGIHLTVAKYFCPGNAGLIVPKS 323
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.139 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,729,982
Number of Sequences: 27539
Number of extensions: 385990
Number of successful extensions: 932
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 10
length of query: 436
length of database: 12,573,161
effective HSP length: 84
effective length of query: 352
effective length of database: 10,259,885
effective search space: 3611479520
effective search space used: 3611479520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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