GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000958-TA|BGIBMGA000958-PA|IPR002524|Cation efflux
protein, IPR009061|Putative DNA binding
         (436 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   2.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)

Query: 293 LGSILVGTILGGV 305
           LGSI+VGT++G +
Sbjct: 48  LGSIIVGTVIGNI 60


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 17/82 (20%), Positives = 36/82 (43%)

Query: 352 GSNLIRYKAEVDFDGRALTRSYLEKHDLNALLEDMKKIDTIDDVETFLLKHGENIVDMLG 411
           G+ L++Y  +VDF+G +  +   +K+       ++     I+  +   ++ G+ +   L 
Sbjct: 508 GTELLKYLRKVDFEGLSGDKFKFDKNGDGPARYNIIHFKQIEPGKYEWVRVGKYLSGELR 567

Query: 412 GEIDRIELKLRKKFPQIRHCDL 433
             +  I+ KL    P    C L
Sbjct: 568 LNMSAIQFKLGHPEPPESVCSL 589


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.139    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,820
Number of Sequences: 429
Number of extensions: 4451
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 2
length of query: 436
length of database: 140,377
effective HSP length: 60
effective length of query: 376
effective length of database: 114,637
effective search space: 43103512
effective search space used: 43103512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)