GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000956-TA|BGIBMGA000956-PA|undefined
         (586 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    28   0.16 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    26   0.83 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   3.4  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   3.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   5.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   7.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   7.7  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 0.16
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 347 LSNELKQFILRKTDNQPANSEDDDVEILSNAENDDPIF 384
           LS   K   + K +++  + +DDD + +SN+EN +P F
Sbjct: 270 LSMNHKYEKIDKEEHESMDDDDDDDDDMSNSENQNPRF 307


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 25.8 bits (54), Expect = 0.83
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 426 NDETLIIPDQENESITSINENGQNIENNSSVIGEGETSLKCVEALIXXXXXXXXXXXVDD 485
           N +T  + DQ      S+NEN +N +++     + + S + V A +           ++D
Sbjct: 88  NGDTSQVDDQNESLEASVNENSKNGDDDEGHEWQADVSEEAVRARMQDLTEGAKNMTIND 147

Query: 486 FNLENK 491
            +LE +
Sbjct: 148 -DLEKR 152


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 136  PCGNNSAVSLSSDNIIQMT-ENDVTVNALTGGLKFRV------DPQTLSSNKMYRLPDGR 188
            P  +  A   S D+    T + DVT+  L  GL   V        Q  +S+K+ + PDG 
Sbjct: 1301 PSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVITWKIKGVQFTTSDKIRQQPDGS 1360

Query: 189  VFAININPKMPGGYSATI 206
            +F  +++    G YS  +
Sbjct: 1361 LFIRDVSRNNAGEYSCHV 1378


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 375 SNAENDDPIFIDENSVESNTNYNENQEVDLTGPGSSEHNETGEKEDDYSRMNDE 428
           +  ++DD   + ++        ++  + D+ G   SE N     +DD   MND+
Sbjct: 154 NKTDDDDDALVSDSDDREKDEEDKRDDTDMHGRIKSERNGKDLDDDD---MNDD 204


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 385 IDENSVESNTNYNENQEVDLTGPGSSEHNETGEKEDDYSRMNDETLIIPDQEN-ESITSI 443
           I E  +    +  E++ +DL+ PG S   E   +    +   D T +  ++E+ E+ T++
Sbjct: 384 IRERQLAVGGSQEESRVLDLSKPGCSYTGEQKSRRKGPAFKVDPTQVESEEEDEETSTTV 443

Query: 444 NENGQNIENNS 454
             N + ++  +
Sbjct: 444 FSNVEVVQEEA 454


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 16/57 (28%), Positives = 19/57 (33%)

Query: 487 NLENKCMENEKPLKTLESITENNATTGNDNRNESNESNTDLTEGSEDNIASKNLNSE 543
           +L  K  +N      L    E N    N N NE         E    N  SKN  +E
Sbjct: 297 DLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNE 353



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 489 ENKCMEN---EKPLKTLESITENNATTGNDNRNESNESNTDLTEGSE 532
           +N+ + N   +KP  T +  T  +A   N+ R+E  ES  D  +GS+
Sbjct: 408 DNRILNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESKKD-KKGSQ 453


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 16/57 (28%), Positives = 19/57 (33%)

Query: 487 NLENKCMENEKPLKTLESITENNATTGNDNRNESNESNTDLTEGSEDNIASKNLNSE 543
           +L  K  +N      L    E N    N N NE         E    N  SKN  +E
Sbjct: 189 DLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNE 245



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 489 ENKCMEN---EKPLKTLESITENNATTGNDNRNESNESNTDLTEGSE 532
           +N+ + N   +KP  T +  T  +A   N+ R+E  ES  D  +GS+
Sbjct: 300 DNRILNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESKKD-KKGSQ 345


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.125    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,464
Number of Sequences: 317
Number of extensions: 4873
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 9
length of query: 586
length of database: 114,650
effective HSP length: 61
effective length of query: 525
effective length of database: 95,313
effective search space: 50039325
effective search space used: 50039325
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 46 (22.6 bits)