Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000955-TA|BGIBMGA000955-PA|undefined
         (90 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    24   0.34 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   4.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   9.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   9.6  

>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
          protein.
          Length = 87

 Score = 23.8 bits (49), Expect = 0.34
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 13 APEKPASSDENVQFPPLPEPTDED 36
          A   P S+   V FPP P P +ED
Sbjct: 38 AMRDPRSNRGPVLFPPGPPPNNED 61


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 14  PEKPASSDENVQFPPL 29
           P KP  ++   +FPPL
Sbjct: 406 PSKPMCAEAFQEFPPL 421


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 27  PPLPEPTDEDFQDDLNEEEKEYIKTKFAVESLRKVMMDLNFTVDGVAKEDK 77
           P +PE   ED  D+  E + +  + +    +++K +  +  +VD V ++ K
Sbjct: 208 PKVPEKKKEDEIDEGKESKTKLSQWRKDGGTVKKKVNYVYRSVDQVLEDGK 258


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 45  EKEYIKTKFAVESLRKVMMDLNFT 68
           ++E +K+K   ES+RK+  ++  T
Sbjct: 368 DQEQLKSKKLEESMRKLDEEMKRT 391


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,422
Number of Sequences: 429
Number of extensions: 1140
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 90
length of database: 140,377
effective HSP length: 48
effective length of query: 42
effective length of database: 119,785
effective search space:  5030970
effective search space used:  5030970
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.6 bits)
S2: 37 (19.0 bits)