Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000954-TA|BGIBMGA000954-PA|undefined
         (86 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    19   5.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    19   5.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    19   7.4  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 5.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 62   ITWGRTLNTDLPRPD 76
            ++WG    T +P+PD
Sbjct: 1030 VSWGTREVTVVPKPD 1044


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 5.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 62   ITWGRTLNTDLPRPD 76
            ++WG    T +P+PD
Sbjct: 1030 VSWGTREVTVVPKPD 1044


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 19.0 bits (37), Expect = 7.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 65  GRTLNTDLPRPDNDRYAYV 83
           G  ++ + PR  +DR AYV
Sbjct: 634 GLDVDWEYPRGADDRAAYV 652


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,419
Number of Sequences: 317
Number of extensions: 539
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 86
length of database: 114,650
effective HSP length: 47
effective length of query: 39
effective length of database: 99,751
effective search space:  3890289
effective search space used:  3890289
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.3 bits)
S2: 36 (18.6 bits)