Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000954-TA|BGIBMGA000954-PA|undefined
         (86 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    25   8.7  

>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 51  AAPVVGTVSPLITWGRTLNTDLPRPDNDR 79
           +APV    SP     R+++TD P P N R
Sbjct: 623 SAPVQKVTSPAPPAARSVSTDQPPPANRR 651


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,556
Number of Sequences: 27539
Number of extensions: 57264
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 1
length of query: 86
length of database: 12,573,161
effective HSP length: 65
effective length of query: 21
effective length of database: 10,783,126
effective search space: 226445646
effective search space used: 226445646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)