GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000954-TA|BGIBMGA000954-PA|undefined
         (86 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   1.1  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    23   4.6  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   6.0  
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    23   8.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    23   8.0  

>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 48  AVRAAPVVGTVSPLITW 64
           AV  +PV+G +S +ITW
Sbjct: 455 AVTVSPVLGIISSIITW 471


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 54  VVGTVSPLITWG 65
           ++G V+P ITWG
Sbjct: 719 LIGAVAPFITWG 730


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 45  IKNAVRAAPVVGTVSPLITWGRTLNTDLPRPDNDRYAYVV 84
           I  A  + P+V ++   ITW  T N     P N  ++Y V
Sbjct: 173 IFGAFSSIPIV-SIDEYITWMITENLINSEPSNSSFSYEV 211


>SPBC83.13 |||mitochondrial tricarboxylic acid
          transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 42 WAIIKNAVRAAPVVGTVSPLITWGRTL 68
          WA I+ + + A ++ T + L  WGR L
Sbjct: 70 WAWIEASTKGAVLLFTSAELEYWGRRL 96


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 53  PVVGTVSPLITWGRTL 68
           P  G VSP +TW  TL
Sbjct: 88  PSFGKVSPNVTWHTTL 103


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,196
Number of Sequences: 5004
Number of extensions: 9719
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 86
length of database: 2,362,478
effective HSP length: 61
effective length of query: 25
effective length of database: 2,057,234
effective search space: 51430850
effective search space used: 51430850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)