GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000954-TA|BGIBMGA000954-PA|undefined
         (86 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0013 - 4921925-4922077,4922176-4922252,4922360-4922445,492...    27   2.5  
04_04_1223 + 31851545-31852609,31854314-31854773,31856201-318562...    25   7.5  
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378...    25   10.0 

>03_02_0013 -
          4921925-4922077,4922176-4922252,4922360-4922445,
          4922527-4922720,4922829-4923115,4923219-4923345,
          4923586-4923816,4923982-4924047,4925300-4925474,
          4925563-4925770,4925886-4925934,4926249-4926578
          Length = 660

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 51 AAPVVGTVSPLITWGRTLNTDLPRPD 76
          A   + TV P++ WGRT N  L R D
Sbjct: 71 ALTALQTVFPVLQWGRTYNFKLFRSD 96


>04_04_1223 +
           31851545-31852609,31854314-31854773,31856201-31856250,
           31856333-31856463,31856569-31856665,31856759-31856950,
           31857121-31857123
          Length = 665

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/33 (27%), Positives = 21/33 (63%)

Query: 48  AVRAAPVVGTVSPLITWGRTLNTDLPRPDNDRY 80
           AV    ++G  +  ++WGR+L+   P+ D++++
Sbjct: 577 AVLQGTLIGGQNVRLSWGRSLSNKQPQHDSNQW 609


>11_01_0490 -
           3782195-3782305,3782929-3783021,3783199-3783294,
           3783373-3783521,3783886-3784039,3784110-3784205,
           3784290-3784379,3784856-3785014,3785150-3785371,
           3785552-3785668,3785753-3785824,3786768-3786836,
           3786947-3787051,3787248-3787562,3787814-3788809
          Length = 947

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 42  WAIIKNAVRAAPVVGTVSPLITWGRTLN 69
           W ++ N V+  P  GT+ P ++  R  N
Sbjct: 570 WGVVVNVVKKPPQSGTLPPALSASRGNN 597


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,893
Number of Sequences: 37544
Number of extensions: 76849
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 3
length of query: 86
length of database: 14,793,348
effective HSP length: 65
effective length of query: 21
effective length of database: 12,352,988
effective search space: 259412748
effective search space used: 259412748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)