GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000954-TA|BGIBMGA000954-PA|undefined
         (86 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)                26   3.8  
SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  
SB_59662| Best HMM Match : efhand (HMM E-Value=2.2)                    25   8.7  

>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
          Length = 850

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 56  GTVSPLITWGRTLNTDLPRPDNDRY 80
           G  +P I W    N D P P +DRY
Sbjct: 179 GHPAPHIAWAIGANGDAPLPTDDRY 203


>SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 45  IKNAVRAAPVVGTVSPLITWGRT 67
           +KN V   PV+ T+ P  +W +T
Sbjct: 318 VKNIVYGKPVIQTLKPQSSWKKT 340


>SB_59662| Best HMM Match : efhand (HMM E-Value=2.2)
          Length = 318

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 40  PSWAIIKNAVRA-APVVGTVSPLITWGRTLNTDLPRPDND 78
           P W  ++N       V+  +SPLI   R L+    +PD D
Sbjct: 98  PQWRELRNISSPHKEVIRRISPLINPSRYLSVSKVQPDQD 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,049
Number of Sequences: 59808
Number of extensions: 80440
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 3
length of query: 86
length of database: 16,821,457
effective HSP length: 63
effective length of query: 23
effective length of database: 13,053,553
effective search space: 300231719
effective search space used: 300231719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)