GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000954-TA|BGIBMGA000954-PA|undefined
         (86 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003221-1|AAO24976.1|  534|Drosophila melanogaster RE03224p pro...    26   5.6  
AJ252086-1|CAB64598.2|  534|Drosophila melanogaster spaghetti pr...    26   5.6  
AE013599-3831|AAF47175.1|  534|Drosophila melanogaster CG13570-P...    26   5.6  

>BT003221-1|AAO24976.1|  534|Drosophila melanogaster RE03224p
           protein.
          Length = 534

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 38  EPPSWAIIKNAVRAAPVVGTVSPLIT 63
           E P++   K A+R+ PVV  VSP  T
Sbjct: 236 EKPAYKRSKKAMRSVPVVDVVSPRAT 261


>AJ252086-1|CAB64598.2|  534|Drosophila melanogaster spaghetti
           protein.
          Length = 534

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 38  EPPSWAIIKNAVRAAPVVGTVSPLIT 63
           E P++   K A+R+ PVV  VSP  T
Sbjct: 236 EKPAYKRSKKAMRSVPVVDVVSPRAT 261


>AE013599-3831|AAF47175.1|  534|Drosophila melanogaster CG13570-PA
           protein.
          Length = 534

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 38  EPPSWAIIKNAVRAAPVVGTVSPLIT 63
           E P++   K A+R+ PVV  VSP  T
Sbjct: 236 EKPAYKRSKKAMRSVPVVDVVSPRAT 261


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.133    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,106,126
Number of Sequences: 52641
Number of extensions: 119256
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 3
length of query: 86
length of database: 24,830,863
effective HSP length: 65
effective length of query: 21
effective length of database: 21,409,198
effective search space: 449593158
effective search space used: 449593158
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)