Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000953-TA|BGIBMGA000953-PA|undefined
         (59 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0691 + 20729452-20729664,20729768-20729962,20730442-207306...    27   1.9  
01_06_0614 + 30621495-30621670,30621817-30622036,30623848-306242...    25   5.9  
07_03_1682 + 28630622-28630832,28630882-28630922,28630983-286311...    25   7.7  

>07_03_0691 +
           20729452-20729664,20729768-20729962,20730442-20730604,
           20730692-20731137
          Length = 338

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 19  KNEAEAATKASVKFCGRHLSEIMSRVCHAYNGPAWDVPTG 58
           K + E A   +V  C   L+       H  NGP W VPTG
Sbjct: 109 KEKLEQACPGTVS-CADILALAARDAVHWSNGPFWPVPTG 147


>01_06_0614 +
           30621495-30621670,30621817-30622036,30623848-30624270,
           30624523-30624906,30624991-30625086,30625161-30625276,
           30625431-30625598,30625685-30625844,30625999-30626196,
           30626304-30626432,30626595-30626673,30627010-30627119
          Length = 752

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 27  KASVKFCGRH-LSEIMSRVCHAYNG 50
           K  V +CG   L++ +S++CH +NG
Sbjct: 715 KIGVFYCGAPVLAQELSKLCHEFNG 739


>07_03_1682 +
           28630622-28630832,28630882-28630922,28630983-28631156,
           28631258-28631426,28631541-28631935
          Length = 329

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 19  KNEAEAATKASVKFCGRHLSEIMSRVCHAYNGPAWDVPTG 58
           K + EA  K +V  C   L+        A  GP+W VP G
Sbjct: 115 KTQIEAVCKQTVS-CADILTVAARDSVVALGGPSWSVPLG 153


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,499,669
Number of Sequences: 37544
Number of extensions: 34853
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 3
length of query: 59
length of database: 14,793,348
effective HSP length: 39
effective length of query: 20
effective length of database: 13,329,132
effective search space: 266582640
effective search space used: 266582640
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)