Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000953-TA|BGIBMGA000953-PA|undefined
         (59 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49055.1 68416.m05359 hypothetical protein                          25   4.8  
At1g64820.1 68414.m07349 MATE efflux family protein similar to r...    25   4.8  
At4g25980.1 68417.m03739 cationic peroxidase, putative similar t...    25   6.4  
At5g15180.1 68418.m01778 peroxidase, putative similar to peroxid...    25   8.4  
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    25   8.4  

>At3g49055.1 68416.m05359 hypothetical protein
          Length = 480

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 22  AEAATKASVKFCGRHLSEIMSRVCHAY 48
           AE A + S++   R +++++SR+ H Y
Sbjct: 400 AEEAAEKSLRLAERRIAQLLSRIEHLY 426


>At1g64820.1 68414.m07349 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family; contains 12
           transmembrane domains, PMID: 11152613
          Length = 502

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 1   MLVSNAIQLTVFMVAVLWKNEAEAATKA 28
           +L+++ IQL VF +   + N  + ATKA
Sbjct: 439 ILIASTIQLIVFALVTFFTNWEQEATKA 466


>At4g25980.1 68417.m03739 cationic peroxidase, putative similar to
           cationic peroxidase [Arachis hypogaea]
           gi|166475|gb|AAA32676
          Length = 371

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 12  FMVAVLWKNEAEAATKASVKFCGRHLSEIMSRVCHAYNGPAWDVPTG 58
           F +    K E EAA    V  C   ++          NGPA++VPTG
Sbjct: 143 FEIVEAVKAELEAACPGVVS-CSDIVALAARDAISLANGPAYEVPTG 188


>At5g15180.1 68418.m01778 peroxidase, putative similar to peroxidase
           ATP12a [Arabidopsis thaliana] gi|1429217|emb|CAA67311
          Length = 329

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 33  CGRHLSEIMSRVCHAYNGPAWDVPTG 58
           C   L+ +      A NGP+W+V TG
Sbjct: 125 CSDVLALVARDAMVALNGPSWEVETG 150


>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1219

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 14   VAVLWKNEAEAATKASVKFCGRHLSEIMSRVCHAYNGPAWDVPTG 58
            V V +K+  ++A + SVK CG   ++  S     +    W+ P G
Sbjct: 1042 VVVSFKDYEDSAKRFSVKCCGNFENKDSSFTRFDFTLAGWNEPCG 1086


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,175,950
Number of Sequences: 28952
Number of extensions: 27272
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 5
length of query: 59
length of database: 12,070,560
effective HSP length: 39
effective length of query: 20
effective length of database: 10,941,432
effective search space: 218828640
effective search space used: 218828640
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)