GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000953-TA|BGIBMGA000953-PA|undefined
         (59 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    23   3.6  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    23   6.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    22   8.4  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1190

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 3    VSNAIQLTVFMVAVLWKNEAEAATKASVKFCGRHLSEIM 41
            V   + L  F+  ++W  ++E    + V  C R + E M
Sbjct: 1147 VDQLLHLHSFLYQIIWNTKSEWNRNSVVDECERAVKEFM 1185


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 35  RHLSEIMSRVCHAYNGPAWDVPTG 58
           R  S+   R    Y GP  DVP G
Sbjct: 129 RRFSQAFMRQLFRYIGPQTDVPAG 152


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 37   LSEIMSRVCHAYN 49
            LS+++SRVCH  N
Sbjct: 1900 LSQMISRVCHPNN 1912


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,541
Number of Sequences: 5004
Number of extensions: 5073
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 59
length of database: 2,362,478
effective HSP length: 40
effective length of query: 19
effective length of database: 2,162,318
effective search space: 41084042
effective search space used: 41084042
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)