GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000953-TA|BGIBMGA000953-PA|undefined
         (59 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50799| Best HMM Match : I-set (HMM E-Value=0)                       26   3.8  
SB_57545| Best HMM Match : zf-C3HC4 (HMM E-Value=0.023)                26   5.1  

>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1195

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 1   MLVSNAIQLTVFMVAVLWKNEAEAATKASVKFCGRHLSEIMSRV 44
           +++   I LT  + AV WK + +  T A++    R L    SRV
Sbjct: 169 VILEQTINLTCVVRAVYWKKDGQIITTATLSGNNRTLITQASRV 212


>SB_57545| Best HMM Match : zf-C3HC4 (HMM E-Value=0.023)
          Length = 601

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 33  CGRHLSEIMSRVCHAYNG 50
           C  HL+E ++ +C A+NG
Sbjct: 286 CSPHLAEKIAEICSAFNG 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,569
Number of Sequences: 59808
Number of extensions: 38111
Number of successful extensions: 177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 2
length of query: 59
length of database: 16,821,457
effective HSP length: 38
effective length of query: 21
effective length of database: 14,548,753
effective search space: 305523813
effective search space used: 305523813
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)