GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000953-TA|BGIBMGA000953-PA|undefined
         (59 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-15|AAB00704.2|  329|Caenorhabditis elegans Hypothetical p...    28   0.90 
Z82082-7|CAE53735.1|   76|Caenorhabditis elegans Hypothetical pr...    27   1.2  
Z66524-4|CAC70103.1|  297|Caenorhabditis elegans Hypothetical pr...    27   2.1  
AF181619-1|AAF01208.1|  297|Caenorhabditis elegans putative ribo...    27   2.1  
AF003140-7|AAB54169.1|  396|Caenorhabditis elegans Hypothetical ...    25   4.8  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    25   8.4  

>U58755-15|AAB00704.2|  329|Caenorhabditis elegans Hypothetical
          protein C34D4.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 7  IQLTVFMVAVLWKNEAEAATKASVKFCG 34
          IQL      V WKN  +   KA VK CG
Sbjct: 50 IQLCYRAREVFWKNNVKLELKAPVKICG 77


>Z82082-7|CAE53735.1|   76|Caenorhabditis elegans Hypothetical
          protein ZC334.10 protein.
          Length = 76

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 11 VFMVAVLWKNEAEAATKASVKFCGRHLSEIMSRVCHAYNGPAWDVPT 57
          VF++ +L       A   + + CGRHL   +  +C    GP  + PT
Sbjct: 6  VFLIFLLISLSVATADFGAQRRCGRHLVNFLEGLC---GGPCSEAPT 49


>Z66524-4|CAC70103.1|  297|Caenorhabditis elegans Hypothetical
           protein T13H5.7 protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 4   SNAIQLTVFMVAVLWKNEAEAATKASVKFCGRHLSEIMS 42
           S + ++T +MV    KNE E   K +V F  RH+S I++
Sbjct: 261 SQSKRMTSWMVP---KNETEVVPKRNVYFKERHMSNILT 296


>AF181619-1|AAF01208.1|  297|Caenorhabditis elegans putative
           ribonuclease H2 largesubunit protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 4   SNAIQLTVFMVAVLWKNEAEAATKASVKFCGRHLSEIMS 42
           S + ++T +MV    KNE E   K +V F  RH+S I++
Sbjct: 261 SQSKRMTSWMVP---KNETEVVPKRNVYFKERHMSNILT 296


>AF003140-7|AAB54169.1|  396|Caenorhabditis elegans Hypothetical
           protein C44E4.4 protein.
          Length = 396

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 19  KNEAEAATKASVKFCGRHLSEIM 41
           + EAEAA KA VKF    L+++M
Sbjct: 162 REEAEAAQKAEVKFGETELTKMM 184


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
          receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 1  MLVSNAIQLTVFMVAVLWKN 20
          +++ +++ LTVF +  LWKN
Sbjct: 30 LIIISSVFLTVFAIRKLWKN 49


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,421
Number of Sequences: 27539
Number of extensions: 28284
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 6
length of query: 59
length of database: 12,573,161
effective HSP length: 40
effective length of query: 19
effective length of database: 11,471,601
effective search space: 217960419
effective search space used: 217960419
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)