Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000952-TA|BGIBMGA000952-PA|IPR003577|Ras small GTPase,
Ras type, IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small
GTPase, Rho type, IPR001806|Ras GTPase, IPR013753|Ras
         (268 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.6  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   7.3  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 180 PETNVNPPFYRQWTAMELDEEEEATVVRSNSTSSS 214
           P T V+ PF+RQ   +      +  V++S S++SS
Sbjct: 256 PSTEVSAPFFRQPLDLYNFRVPQHQVLQSPSSTSS 290


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 27  IAILGQSGVGKSALV 41
           +AILG SG GK+ L+
Sbjct: 107 LAILGSSGAGKTTLL 121


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 27  IAILGQSGVGKSALV 41
           +AILG SG GK+ L+
Sbjct: 107 LAILGSSGAGKTTLL 121


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 147 WRVSNKWFRPRGD 159
           W ++NK   P+GD
Sbjct: 830 WNINNKRLEPKGD 842


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 74  FEILDSAGDSGDTALETPVVLVGNKID 100
           F +   A D  + A +T ++LVG KID
Sbjct: 207 FYLSKRASDLCNEANKTKILLVGLKID 233


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.129    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,029
Number of Sequences: 317
Number of extensions: 1996
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 268
length of database: 114,650
effective HSP length: 56
effective length of query: 212
effective length of database: 96,898
effective search space: 20542376
effective search space used: 20542376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)