Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000952-TA|BGIBMGA000952-PA|IPR003577|Ras small GTPase,
Ras type, IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small
GTPase, Rho type, IPR001806|Ras GTPase, IPR013753|Ras
(268 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 57 3e-09
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 45 1e-05
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 44 2e-05
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 42 7e-05
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 42 7e-05
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 42 9e-05
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 40 4e-04
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 38 0.002
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 38 0.002
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 33 0.043
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 31 0.17
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 29 0.53
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 29 0.70
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 28 1.2
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 28 1.2
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 28 1.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.1
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 2.1
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 2.8
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 27 3.7
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 27 3.7
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 26 4.9
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 4.9
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 6.5
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 8.6
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 25 8.6
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.6
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 8.6
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 25 8.6
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAGD 82
+ +K+ ++G GVGKSAL ++ I F+ EYD +E Y + ID E ++LD+AG
Sbjct: 7 REYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQ 66
Query: 83 SGDTALETPVVLVG 96
+A+ + G
Sbjct: 67 EEYSAMREQYMRTG 80
Score = 39.1 bits (87), Expect = 7e-04
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 91 PVVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFH-EISVRESIDQV-WSVFRDARRFWR 148
PVVLV NK D +R++S EG++ +K + C+ +R ++++ +S+ R RR+ +
Sbjct: 115 PVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNK 174
Query: 149 VSNKWFR 155
K F+
Sbjct: 175 SEEKGFQ 181
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 26 KIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQ-TVIDNEMVYFEILDSAG 81
K+ ILG SGVGK+ L+ +F+ ++F EY + + + + V+D+++V ++ D+AG
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAG 66
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/62 (30%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 21 KPKAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDS 79
K K+ ILG+SGVGK++++ +++ R+F +Y + + + + V +D+++V ++ D+
Sbjct: 5 KKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDT 64
Query: 80 AG 81
AG
Sbjct: 65 AG 66
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 42.3 bits (95), Expect = 7e-05
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 26 KIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQT--VIDNEMVYFEILDSAG 81
K+ +LG S VGKS+LV+RF+ +F +S + + QT + +N V EI D+AG
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAG 73
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 42.3 bits (95), Expect = 7e-05
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQT-VIDNEMVYFEILDSAG 81
FK ++G SGVGKS L++RF F E S + +A + V+DN+ + +I D+AG
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAG 68
Score = 33.9 bits (74), Expect = 0.025
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 92 VVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRESIDQVWSVFRDA-RRFWRVS 150
++LVGNK D L R +STEE Q + E + F E S ++ V F+ +R+
Sbjct: 118 IMLVGNKTDLLHLRAVSTEEAQAFAAE-NNLSFIETSAMDA-SNVEEAFQTVLTEIFRIV 175
Query: 151 NKWFRPRGDTDVHTTA 166
+ GD VH TA
Sbjct: 176 SNRSLEAGDDGVHPTA 191
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 41.9 bits (94), Expect = 9e-05
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAG 81
K+ +IA+LG VGKS+L V+++ F+ Y +E ++ + EI+D+AG
Sbjct: 5 KSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAG 63
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 91 PVVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRES 132
P+V+VGNK D R ++ EEG+ + E C + E S R +
Sbjct: 113 PIVVVGNKSDLHMQRAVTAEEGKALANEWKC-AWTEASARHN 153
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAG 81
FK+ ++G SGVGKS L++RF + Y S + + +T ++ + V +I D+AG
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAG 66
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAG 81
+ FK+ LG+ VGK++L+ RF+ +F Y + + + +T+ +++ V ++ D+AG
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 76 ILDSAGDSGDTALETPVVLVGNKIDQLGDRMISTEEGQRRSKEI 119
I D + GD + +VLVGNK D R ++ EEG++++KE+
Sbjct: 106 IEDVRAERGDDVI---IVLVGNKTDLADKRQVTQEEGEKKAKEL 146
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 KIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAG 81
K+ ++G SGVGKS L++RF F + + + + +T+ +D + + +I D+AG
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 67
Score = 33.1 bits (72), Expect = 0.043
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 93 VLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRESIDQVWSVFRDAR 144
+L+GNK D R +S E+GQ + E+G V F E S + +++ + F AR
Sbjct: 118 ILIGNKCDCEDQRQVSFEQGQALADELG-VKFLEASAKTNVNVDEAFFTLAR 168
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 33.1 bits (72), Expect = 0.043
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 21 KPKAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSA 80
KP KI ILG GK++L+ F F Y+ + + Y +D + + D+A
Sbjct: 10 KPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTA 69
Query: 81 G 81
G
Sbjct: 70 G 70
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNL-EKIYAFQTVIDNEMVYFEILDSAG 81
FK+ ++G G GK+ V R +T F +Y + L +++ + + F + D+AG
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAG 67
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 29.5 bits (63), Expect = 0.53
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 161 DVHTTALSRPLARASSDTTPETNVNPPFYRQWTAMELDEEEEATVVRSNSTSSS 214
D +TA S ++++ P+ N PF R +T+ ++E+E+ + +S++ S+
Sbjct: 362 DNASTASSEAISQSMRSFQPQPNTGSPFPR-FTSTNTEDEQESDIPQSDANDST 414
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 29.1 bits (62), Expect = 0.70
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 27 IAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQ 64
+ I G++G GKS VV+FI ++ + +L+ + Q
Sbjct: 596 VVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVVCTQ 633
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 1 MAVSTSTSPKSSLAKLVLYPKPKAFKIAILGQSGVGKSAL---VVRFITRRFIGE 52
++VS S + + L + L+ P K+A++G++G GKS L ++RF T R GE
Sbjct: 1217 VSVSYSAAGPTILKDVNLHINPSE-KVAVVGRTGSGKSTLGLTLLRF-THRISGE 1269
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 26 KIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAG 81
K+ I+G GK+ L++ F F Y + + Y +D V + D+AG
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAG 63
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 98 KIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRESIDQVWSVFRDARRFWRVSNK 152
++ + ++TEEGQ +++IG + E S + + + V VF A R + +K
Sbjct: 131 ELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTN-EGVREVFESATRAAMLKHK 184
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 26 KIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAG 81
K+ I+G GK+ L++ F F Y + + Y +D + + D+AG
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAG 63
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 164 TTALSRPLARASSDTTPETNVNPPFYRQWTAMELDEEEEATVVRSNSTSSSGQS 217
T+A S PL A+S T+ + P Y + + + +NST+++ S
Sbjct: 384 TSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSAS 437
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 164 TTALSRPLARASSDTTPETNVNPPFYRQWTAMELDEEEEATVVRSNSTSSSGQS 217
T+A S PL A+S T+ + P Y + + + +NST+++ S
Sbjct: 498 TSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSAS 551
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 168 SRPLARASSDTTPETNVNPPFYRQWTAMELDEEEEATVVRSNSTSSSGQ 216
SR + A++D+ P T +PPF + + TV S+ T+ Q
Sbjct: 660 SRSVISAATDSKPSTRTSPPFVN--NTKPIVAKSPVTVTASSETNKKSQ 706
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 26 KIAILGQSGVGKSALVVRFITRRF 49
KI + G SG GKS L+ RF+ ++
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQW 34
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 92 VVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEIS 128
VVL G+K D R +STEE E HE S
Sbjct: 121 VVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETS 157
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 25 FKIAILGQSGVGKSALVVRFITR 47
F + +LG+SG GKS LV + R
Sbjct: 96 FNVLVLGESGSGKSTLVNTLLNR 118
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 156 PRGDTDVHTTALSRPLARASSDTTPETNVNPPFYRQWTAMELDEEEEATVVRSNSTSSSG 215
P T+ S P A +S+ + P T V+ P Y + V + TS++
Sbjct: 83 PTTSTESVVVTTSAPAASSSATSYPATFVSTPLYTMDNVTAPVWSNTSVPVSTPETSATS 142
Query: 216 QSDCLEEFRARASTDS 231
S+ + A +S S
Sbjct: 143 SSEFFTSYPATSSESS 158
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/78 (16%), Positives = 28/78 (35%)
Query: 185 NPPFYRQWTAMELDEEEEATVVRSNSTSSSGQSDCLEEFRARASTDSXXXXXXXXXXXXX 244
N P+Y Q +++D ++ S++TS++ S + +S+ S
Sbjct: 96 NGPYYSQCIPVDIDPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISS 155
Query: 245 XXXXXXXXXXXMSVAMRG 262
S++ G
Sbjct: 156 TISSSVSTSSFTSLSSSG 173
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRR 48
K +AILG S GKS+L+ RR
Sbjct: 238 KGINVAILGPSNAGKSSLINLLANRR 263
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 1 MAVSTSTSPKSSLAKLVLYPKPKAFKIAILGQSGVGKSALVVRFI 45
M S+S S L L L P + + G SGVGKS L+ R +
Sbjct: 1 MTPQLSSSVASKLVTLKLKP------VVVFGPSGVGKSTLLKRLL 39
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 4.9
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 17/163 (10%)
Query: 27 IAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVID-NEMVYFEILDSAGDSG- 84
I+ +G S V + ++ +T RF S E ++ + +ID E F+ A +G
Sbjct: 1153 ISPVGSSPVEAVSSTLKNLTLRF-----SQSENVFPIEQIIDITERYAFDQQGEAVATGW 1207
Query: 85 --DTALETPVV--LVGNKIDQLGDRMISTEEGQRRS----KEIGCVC--FHEISVRESID 134
DT L V L+ ++QL DR +G+ R KE+ + +HE+SVR +
Sbjct: 1208 VIDTFLGAGVSHELIFIVLNQLYDRREKPWQGKDRLFFLIKEVTHLLKLWHEVSVRAGVA 1267
Query: 135 QVWSVFRDARRFWRVSNKWFRPRGDTDVHTTALSRPLARASSD 177
Q DA K+ G D T + L S+
Sbjct: 1268 QTSKPSFDAPLVLEAIEKYKNALGAPDTATKSCKENLISLDSE 1310
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 170 PLARASSDTTPE--TNVNPPFYRQWTAMELDEEEEATVVRSNSTSSSGQSD 218
P+ R S ++P+ N++ R + LD++ ++ + SNST+S D
Sbjct: 974 PICRPSQGSSPKLKNNLSNTEERMGSRALLDDKTDSVITASNSTTSGLSRD 1024
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 1 MAVSTSTSPKSSLAKLVLYPKPKAFKIAILGQSGVGKSAL 40
+ VS S + L + L PK KIAI+G++G GKS +
Sbjct: 1185 LTVSYSIGQAAVLEDINLEILPKE-KIAIVGRTGSGKSTM 1223
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 48 RFIGEYDSNLEKIYAFQTVIDNEM 71
+F+ D+ LEK+YAF I E+
Sbjct: 45 KFVSVMDAQLEKVYAFHLEILKEL 68
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 171 LARASSDTTPETNVNPPFYRQWTAMELDEEEEATVVRSNSTSSSGQSDCLEEFRARASTD 230
L A+S +TP T WT + ++ + S +TS S Q+ F +ST
Sbjct: 427 LPDATSSSTPTTENK----ESWTNQGIKSSQQRSANASPATSPSNQASIHASFTKESSTH 482
Query: 231 S 231
S
Sbjct: 483 S 483
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 99 IDQLGDRMISTEEGQRRSKEIGCVCFHEISVRESIDQ 135
++Q D +S E+G KE + F E+ +R I++
Sbjct: 53 LEQYLDSYVSLEDGDHDPKEAKELVFREVQLRHRINE 89
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 8.6
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 3 VSTSTSPKSSLAKLVLYPKPKAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEK-IY 61
++ STS + +PK +F I + G + + V F+ F E+ +++ +
Sbjct: 256 LANSTSQSEEARTITAWPKLHSFAIGLPGSPDLLAARKVADFL-HTFHHEHTFTIDEGLD 314
Query: 62 AFQTVIDNEMVYFEILDSAGDSGDTALETPVVLVGNKIDQLGDRMISTEEG 112
A + VI + Y D TP+ L+ KI G +M+ + EG
Sbjct: 315 ALRDVIYHLETY--------DVTTIRASTPMYLLSRKIKAQGVKMVLSGEG 357
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.129 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,065,439
Number of Sequences: 5004
Number of extensions: 40680
Number of successful extensions: 179
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 41
length of query: 268
length of database: 2,362,478
effective HSP length: 72
effective length of query: 196
effective length of database: 2,002,190
effective search space: 392429240
effective search space used: 392429240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -