Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000952-TA|BGIBMGA000952-PA|IPR003577|Ras small GTPase,
Ras type, IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small
GTPase, Rho type, IPR001806|Ras GTPase, IPR013753|Ras
(268 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) 72 4e-13
SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12) 71 1e-12
SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_6223| Best HMM Match : Ras (HMM E-Value=0) 63 2e-10
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 63 2e-10
SB_24106| Best HMM Match : Ras (HMM E-Value=1e-35) 62 5e-10
SB_42246| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_45581| Best HMM Match : Ras (HMM E-Value=0.069) 54 1e-07
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 51 1e-06
SB_45967| Best HMM Match : Ras (HMM E-Value=2.1e-07) 50 3e-06
SB_1071| Best HMM Match : Ras (HMM E-Value=0) 49 3e-06
SB_34024| Best HMM Match : VLPT (HMM E-Value=3.7) 48 1e-05
SB_33026| Best HMM Match : Ras (HMM E-Value=3.7e-08) 46 2e-05
SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19) 45 6e-05
SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21) 45 8e-05
SB_4971| Best HMM Match : Ras (HMM E-Value=0) 45 8e-05
SB_5178| Best HMM Match : Ras (HMM E-Value=9e-10) 44 2e-04
SB_13045| Best HMM Match : Ras (HMM E-Value=0) 40 0.002
SB_11757| Best HMM Match : Ras (HMM E-Value=0) 39 0.004
SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_7589| Best HMM Match : Ras (HMM E-Value=0) 38 0.007
SB_34767| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_2880| Best HMM Match : Ras (HMM E-Value=3.2e-17) 37 0.015
SB_6284| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_29253| Best HMM Match : Ras (HMM E-Value=2.8e-05) 37 0.020
SB_1286| Best HMM Match : Ras (HMM E-Value=2e-09) 37 0.020
SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.046
SB_24842| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_33745| Best HMM Match : Ras (HMM E-Value=2.5e-21) 35 0.061
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_11841| Best HMM Match : Ras (HMM E-Value=0) 35 0.080
SB_33691| Best HMM Match : Ras (HMM E-Value=2.8e-13) 35 0.080
SB_28695| Best HMM Match : Ras (HMM E-Value=0) 35 0.080
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 34 0.11
SB_22751| Best HMM Match : Ras (HMM E-Value=0.0049) 34 0.14
SB_17524| Best HMM Match : Ras (HMM E-Value=2.1e-10) 34 0.14
SB_12958| Best HMM Match : Ras (HMM E-Value=6e-13) 34 0.14
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15) 33 0.19
SB_36483| Best HMM Match : Ras (HMM E-Value=0) 33 0.19
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 33 0.25
SB_54577| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_27557| Best HMM Match : Ras (HMM E-Value=0) 33 0.32
SB_1277| Best HMM Match : DAO (HMM E-Value=6e-32) 32 0.43
SB_53183| Best HMM Match : Ras (HMM E-Value=0) 32 0.57
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_8853| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_48712| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_1750| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42) 31 0.99
SB_37276| Best HMM Match : Ras (HMM E-Value=0.00045) 31 0.99
SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31) 30 1.7
SB_17523| Best HMM Match : MMR_HSR1 (HMM E-Value=4.2) 30 1.7
SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19) 30 1.7
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_7861| Best HMM Match : MMR_HSR1 (HMM E-Value=0.96) 30 2.3
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022) 29 4.0
SB_58218| Best HMM Match : Ras (HMM E-Value=1.4013e-44) 29 5.3
SB_38635| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_1645| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_35222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_33941| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 7.0
SB_31085| Best HMM Match : RVT_1 (HMM E-Value=0.0094) 28 7.0
SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_4725| Best HMM Match : Mt_ATP-synt_D (HMM E-Value=1.4) 28 7.0
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 28 9.2
SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 28 9.2
SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01) 28 9.2
>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
Length = 965
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 26 KIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAGDSGD 85
K+ I+G+ GVGKSAL VRF+T+RFIGEYD LE Y + E+V E+ D+AG++
Sbjct: 863 KVVIIGEDGVGKSALTVRFLTKRFIGEYDDTLESTYRQDAEVAGEVVAIELTDTAGENSP 922
Query: 86 TALE 89
LE
Sbjct: 923 AKLE 926
>SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12)
Length = 460
Score = 70.9 bits (166), Expect = 1e-12
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAGD 82
K ++ +LG+ GVGKSAL VRF+TRRFIGEYD LE + IDNE V +I D+AG+
Sbjct: 15 KPVRVVVLGKDGVGKSALTVRFLTRRFIGEYDQTLESTHRHILQIDNEDVSLDISDTAGE 74
>SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 69.3 bits (162), Expect = 3e-12
Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 3 VSTSTSPKSSLAKLVLYPKPKAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYA 62
V TSP++ +A +A+LG+ GVGKSA VR +TRRFIGEYD LE Y
Sbjct: 160 VEKQTSPQAKRRWKSFMTNNRALSVAVLGKDGVGKSAFTVRALTRRFIGEYDPFLELNYK 219
Query: 63 FQTVIDNEMVYFEILDSAGDSGDTALETPVVLVGNKIDQLGDRMISTEEGQRRSK 117
ID + + ++LD+AG A +P K QL S E+ +R S+
Sbjct: 220 HSMEIDGQYLALDVLDTAGKVSREARMSP--RQKTKTGQLAPTGNSEEKLERASE 272
>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
Length = 1665
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAGD 82
K +K+ ++G GVGKSAL ++FI F+ +YD +E Y Q VID + + +ILD+AG
Sbjct: 10 KQYKLVVVGGGGVGKSALTIQFIQSHFVSDYDPTIEDSYRKQCVIDERVAHLDILDTAGQ 69
Query: 83 SGDTAL 88
+A+
Sbjct: 70 EEFSAM 75
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 89 ETPVVLVGNKIDQLGDRMISTEEGQRRSKEI 119
E P+++ GNK D +R +ST EGQ ++++
Sbjct: 116 EFPMIICGNKSDLEYERTVSTAEGQELARQL 146
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAG 81
K +K+ +LG GVGKSAL V+F+T +F+ +YD +E Y + +DN EILD+AG
Sbjct: 2 KEYKVVVLGSGGVGKSALTVQFVTGQFVEKYDPTIEDFYRKEIEVDNNPSILEILDTAG 60
>SB_24106| Best HMM Match : Ras (HMM E-Value=1e-35)
Length = 263
Score = 62.1 bits (144), Expect = 5e-10
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSA 80
++IA+LG GVGK+AL+VRF+ RF+GEYD +E Y ID+ V EILD+A
Sbjct: 6 YRIALLGDEGVGKTALLVRFLCHRFLGEYDPTIEDKYRKSINIDDVTVTLEILDTA 61
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 92 VVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRE 131
V+++GNK D +G+R ++ +EGQR ++ G + F E S E
Sbjct: 142 VLVIGNKSDLIGERDVTRDEGQRLAETYGWL-FAEASALE 180
>SB_42246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSA 80
+ + +LGQ+GVGKSAL+VRF T RFI EYD LE Y ID + I D+A
Sbjct: 128 YSLVLLGQAGVGKSALLVRFCTGRFIHEYDPTLEMTYDVSATIDEDPATLHITDTA 183
Score = 35.5 bits (78), Expect = 0.046
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 87 ALETPVVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRESIDQVWSVFRDARR 145
AL T +VL GNK D R +S +E + + E CV FHE S +I+ +F D R
Sbjct: 227 ALTTLIVLAGNKCDLKHCRAVSRQEAREFAAEHECV-FHETSAANNIN-TKVIFHDCVR 283
>SB_45581| Best HMM Match : Ras (HMM E-Value=0.069)
Length = 284
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNL 57
++ ++ +LGQ GVGKSAL VR +T+RFIGEYDS L
Sbjct: 15 RSLRVVVLGQDGVGKSALTVRLLTKRFIGEYDSTL 49
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAG 81
FK+ +LG+S VGKS+LV+RF+ +F +S + + QTV +D+ V FEI D+AG
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 79
>SB_45967| Best HMM Match : Ras (HMM E-Value=2.1e-07)
Length = 92
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 22 PKAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAG 81
PK+ KIA++G VGKS+L ++F+ +F+ YD +E + + + E++D+AG
Sbjct: 4 PKSRKIAVMGFRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKNIKYKGQEFFLELVDTAG 63
>SB_1071| Best HMM Match : Ras (HMM E-Value=0)
Length = 228
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIY 61
K +K+ +LG GVGKSAL V+F+T +F+ +YD +E Y
Sbjct: 2 KEYKVVVLGSGGVGKSALTVQFVTGQFVEKYDPTIEDFY 40
>SB_34024| Best HMM Match : VLPT (HMM E-Value=3.7)
Length = 368
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 6 STSPKSSLAKLVLYPKP-KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNL 57
S +PK K KP + + + +LG +GVGK+ALVVRF+T RF+ EYD L
Sbjct: 305 SLAPKPKDPKDGNNNKPSEKYSMVVLGAAGVGKTALVVRFVTGRFLNEYDPTL 357
>SB_33026| Best HMM Match : Ras (HMM E-Value=3.7e-08)
Length = 155
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 40 LVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAG 81
L VRFITRRFIGEYD LE Y + + + +++D+AG
Sbjct: 2 LTVRFITRRFIGEYDPCLEASYRHHLTVHGQYIAMDVVDTAG 43
>SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19)
Length = 351
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEM-VYFEILDSAG 81
F++ +LG GVGK++LV RFI+ F +Y + +Y + + + EI+D+AG
Sbjct: 108 FRVVVLGSGGVGKTSLVKRFISGTFSEQYTPTVGDLYEKSVTLSKDFNAFLEIMDTAG 165
>SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21)
Length = 242
Score = 44.8 bits (101), Expect = 8e-05
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 6 STSPKSSLAKLVLYPKPKAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQT 65
S+SPK S L + F I G S VGK++L++RF+ F +Y +E +
Sbjct: 16 SSSPKDSETSL------RRFTIVFFGASSVGKTSLILRFLGYAFNDDYSPTIEDFFIKHV 69
Query: 66 VIDNEMVYFEILDSAG 81
+NE +I+D++G
Sbjct: 70 FFNNETYELQIIDTSG 85
>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
Length = 209
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAGDS 83
FK+ ++G SGVGKS+L++RF F Y S + + +T+ +D + + +I D+AG
Sbjct: 9 FKLLLIGDSGVGKSSLLLRFADDTFSNTYISTIGVDFKIRTLTVDGKTIKLQIWDTAGQE 68
Query: 84 GDTALET 90
L T
Sbjct: 69 RFRTLTT 75
>SB_5178| Best HMM Match : Ras (HMM E-Value=9e-10)
Length = 166
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 26 KIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAGDSGD 85
+IA+ G +GVGK+++V RF +F EY+ +E Y+ + ++ DS+G
Sbjct: 10 EIAVFGGAGVGKTSIVKRFYCGKFSEEYEPTVEDCYSKVLNKNGSIMVLNTTDSSGSYQF 69
Query: 86 TALETPVV--LVGNKIDQLGDRMISTEE 111
A+ + GNK D R +S+E+
Sbjct: 70 PAMREVAIKRASGNKKDLEEQREVSSEQ 97
>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
Length = 629
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAG 81
+KI ++G SGVGKS+L+ RF F E S + +A +++ ++ +++ ++ D+AG
Sbjct: 13 YKIVLIGDSGVGKSSLLSRFTRNEFDIESKSTIGVEFATRSIQVEGKIIKAQVWDTAG 70
>SB_11757| Best HMM Match : Ras (HMM E-Value=0)
Length = 211
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 16 LVLYPKPKAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFE 75
LVL K + K I+G GVGK++L+V ++ F Y Y ++ ++ E
Sbjct: 10 LVLERKKEQLKCVIVGDGGVGKTSLLVSYMMDGFPNSYVPTAFDTYHVTVEVNKKLCMIE 69
Query: 76 ILDSAGDSGDTAL 88
D+AG AL
Sbjct: 70 FCDTAGQEDFDAL 82
>SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 26 KIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAG 81
K+ ++G GVGKSA ++ T F GEY + Y+ ++D + + D+AG
Sbjct: 7 KLVVVGDGGVGKSAFLITATTNAFPGEYIPTVFDNYSSNIMLDGKAYNVGLWDTAG 62
>SB_7589| Best HMM Match : Ras (HMM E-Value=0)
Length = 640
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQT-VIDNEMVYFEILDSAG 81
+ FKI + G + VGKS+ ++R RF +S L + +T V+D + ++ D+AG
Sbjct: 441 RMFKIVLAGDAAVGKSSFILRLCRNRFHSALNSTLGVDFQMKTLVVDGKTYALQLWDTAG 500
>SB_34767| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 37.1 bits (82), Expect = 0.015
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 64 QTVIDNEMVYFEILDSAGDSGDTALETPVVLVGNKIDQLGDRMISTEEGQRRSKEIGCVC 123
QT +D + + + LDS + P +LVGNK D L DR + E + KE +C
Sbjct: 104 QTTLDGAIKWKKDLDSKYKL-HSRKPVPCILVGNKSD-LPDRPVDKEIIDKLCKEHSFLC 161
Query: 124 FHEISVRESID 134
+ E+SV+E I+
Sbjct: 162 WTEMSVKEDIN 172
>SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 26 KIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAG 81
KI LG GVGKS+L RFI F +Y + + +TV +D+ V +I D+AG
Sbjct: 165 KIVFLGDQGVGKSSLAGRFIYDIFEEKYQPTIGIDFMTKTVLLDDFEVRLQIWDTAG 221
>SB_2880| Best HMM Match : Ras (HMM E-Value=3.2e-17)
Length = 134
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 89 ETPVVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISV-RESIDQVW-SVFRDARR 145
+ P+VLVGNK D G R ++T+EGQ + C F + R +D + + R+ R+
Sbjct: 42 DIPIVLVGNKDDLEGKREVTTQEGQELAHRFDCPFFETSACQRHFVDDAFHGLVREIRK 100
>SB_6284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAG 81
+ K ++G VGK+ L++ + T +F EY + YA +I E + D+AG
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
>SB_29253| Best HMM Match : Ras (HMM E-Value=2.8e-05)
Length = 68
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDS 79
FK+ ++G SGVGKS L+ RF F E S + +A +++ +D + + +I D+
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
>SB_1286| Best HMM Match : Ras (HMM E-Value=2e-09)
Length = 123
Score = 36.7 bits (81), Expect = 0.020
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 92 VVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRESIDQVWSVFR 141
++LVGNK D R ++ EEG+R++KE+ V F E S + + V +FR
Sbjct: 34 IMLVGNKTDLSDKRQVTAEEGERKAKELN-VMFIETSAKAGYN-VKQLFR 81
>SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 35.5 bits (78), Expect = 0.046
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAG 81
K FKI I+G S VGK+ L R T +F ++ + + +++ ++ E V ++ D+AG
Sbjct: 45 KTFKIIIIGDSNVGKTCLAYRLCTGKFPERTETTIGVDFWEKSLELNGEFVKLQLWDTAG 104
>SB_24842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 35.1 bits (77), Expect = 0.061
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAG 81
FKI ++G + VGK+ LV +F F + + +TV +D E V +I D+AG
Sbjct: 8 FKIILVGDANVGKTCLVRQFTKGYFPPNQGPTIGVDFTIKTVDVDGEKVKLQIWDTAG 65
>SB_33745| Best HMM Match : Ras (HMM E-Value=2.5e-21)
Length = 115
Score = 35.1 bits (77), Expect = 0.061
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNE-MVYFEILDSAG 81
FK+ I+G S VGK++ + R+ F + S + + +TV N+ V +I D+AG
Sbjct: 22 FKLLIIGNSAVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAG 79
>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 35.1 bits (77), Expect = 0.061
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 26 KIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAG 81
KI I+G+SGVGKS+L++RF F + + + + +T+ ++ I D+AG
Sbjct: 10 KILIVGESGVGKSSLLLRFTDDTFDPDIGATIGVDFKVKTLTVEGNKAKLAIWDTAG 66
>SB_11841| Best HMM Match : Ras (HMM E-Value=0)
Length = 523
Score = 34.7 bits (76), Expect = 0.080
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 87 ALETPVVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEIS--VRESIDQV-WSVFRDA 143
A E P+VLVGNK D L R +ST + Q +K + F E S R+ +D +++ R+
Sbjct: 332 AEEVPMVLVGNKCD-LPQRTVSTSDAQELAKSYN-IPFQETSAKTRQGVDDAFYTLVREI 389
Query: 144 RR 145
R+
Sbjct: 390 RK 391
>SB_33691| Best HMM Match : Ras (HMM E-Value=2.8e-13)
Length = 270
Score = 34.7 bits (76), Expect = 0.080
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 22 PKAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAG 81
P +KI+ILG GVGK++L+ F +F ++ ++ + +D I+D+AG
Sbjct: 10 PFDYKISILGAGGVGKTSLLKTFFGHKFSEKHVPTVDDYFIHSVNMDGVYYSTCIVDTAG 69
>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
Length = 1058
Score = 34.7 bits (76), Expect = 0.080
Identities = 15/60 (25%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAG 81
+ FK+ +G SGVGKS+ + RF ++ + + + + +T+ ++ + + ++ D+AG
Sbjct: 895 RVFKVVFIGDSGVGKSSFLHRFCHDQWKPSFTATIGVDFQIKTMNVNGQCIAIQLWDTAG 954
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIG-EYDSNLEKIYAFQTVIDNEMVYFEILDSAGDS 83
F++ ++G GVGKS++ +R++ F +Y L I T E Y DS+ +
Sbjct: 2599 FRLCVVGSGGVGKSSVTIRYLKNEFTEIDYCGKLYDIEVVDTAGQEE--YTSFRDSSLAT 2656
Query: 84 GDTAL 88
GD L
Sbjct: 2657 GDAFL 2661
>SB_22751| Best HMM Match : Ras (HMM E-Value=0.0049)
Length = 51
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 92 VVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRESIDQVWSVFRD 142
+VLVGNK D +R++ ++GQ +K+ F E S + I+ V +F D
Sbjct: 1 MVLVGNKCDLEDERVVGKDQGQNLAKQFANCTFLETSAKAKIN-VNEIFYD 50
>SB_17524| Best HMM Match : Ras (HMM E-Value=2.1e-10)
Length = 159
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 20 PKPKAFKIAILGQSGVGKSALVVRFITRRFIGEYDS--NLEKIYAFQTVIDNEMVYFEIL 77
P+ + +KIA+ G+ GVGK+++ R T F E S ++++ + I N+ + +
Sbjct: 4 PEDEVYKIALCGKMGVGKTSIYTRLSTDEFPEEEQSLHHIDQCFIPLVCICNKKLKIHLW 63
Query: 78 DSAG 81
D+ G
Sbjct: 64 DTLG 67
>SB_12958| Best HMM Match : Ras (HMM E-Value=6e-13)
Length = 168
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 85 DTALETPVVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISV-RESIDQVWSVFRDA 143
D + P+VLVGNK D R ++ +E + + E GC + ++ ++ ++
Sbjct: 66 DDICQIPIVLVGNKRDLRRGRCVAKDEAREFASEYGCSHYETSALTNRNVHVIFYNMAFQ 125
Query: 144 RRFWRVSNK 152
RF + SN+
Sbjct: 126 TRFTKASNR 134
>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
Length = 857
Score = 33.5 bits (73), Expect = 0.19
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLE-KIYAFQTVIDNEMVY-------FEI 76
FK+ ++G GVGK++L+ R++ + F Y + + I ++ + +V+ F
Sbjct: 672 FKVLVIGDLGVGKTSLIKRYVHQFFSVHYRATVSFNIVYYKEAVGAFIVFDVTRASTFSA 731
Query: 77 LDSAGDSGDTALE------TPVVLVGNKIDQLGDRMI-STEEGQRRSKEIGCVCFHEISV 129
+ + D L+ P VL+ NK DQ + ++ ++ + + G + + E S
Sbjct: 732 VQKWKNDLDNKLQLPSGEPIPAVLLANKCDQAKEGLVNNSAQMDEYCADKGFIGWFETSA 791
Query: 130 RESID 134
+E ++
Sbjct: 792 KEDVN 796
>SB_36483| Best HMM Match : Ras (HMM E-Value=0)
Length = 213
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNL-EKIYAFQTVIDNEMVYFEILDSAGDS 83
FK+ +LG VGKS+L+ RF F + + + + +D + V ++ D+AG+
Sbjct: 11 FKVLVLGDCNVGKSSLIRRFHDDEFNAQLCTTIGVDFFIHDFDLDGKKVKLQLWDTAGEE 70
Query: 84 GDTAL 88
AL
Sbjct: 71 KYRAL 75
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 92 VVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRESIDQVWSV 139
+VL+ NK D R + T EG++ ++ I C F+E+S E +Q+ V
Sbjct: 1094 IVLLANKHDLGHKRKVLTTEGRQMAQAIKCP-FYEVSASEGFEQIRKV 1140
Score = 32.7 bits (71), Expect = 0.32
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 39 ALVVRFITRRFIGEYDSNLEKI 60
A+ VRF T+RFIGEYDS+ +I
Sbjct: 856 AVAVRFATKRFIGEYDSSQGEI 877
>SB_54577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 42 VRFITRRFIGEYDSNL 57
VRF+TRRFIGEYD +L
Sbjct: 42 VRFLTRRFIGEYDKDL 57
>SB_27557| Best HMM Match : Ras (HMM E-Value=0)
Length = 184
Score = 32.7 bits (71), Expect = 0.32
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 67 IDNEMVYFEILDSAGDSGDTALETPVV--LVGNKIDQLGDRMISTEEGQRRSKEIGCVCF 124
I N + ++D ++ E VV LVG+KID+ R++STEEG+ + E + F
Sbjct: 96 ITNRDSFVNVMDWYKEAKQCVEEAEVVFMLVGHKIDKESKRVVSTEEGECFA-EAHNMMF 154
Query: 125 HEISVRE--SIDQVW-SVFRDARRFWRVSN 151
E S + +I++ + SV + W+ N
Sbjct: 155 IETSAKVLCNIEEAFISVAEEVTNAWKEEN 184
>SB_1277| Best HMM Match : DAO (HMM E-Value=6e-32)
Length = 523
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/41 (34%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 92 VVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRES 132
V+LVGNK D +R++S + G++ + ++G + F+E S +++
Sbjct: 15 VILVGNKCDMEEERVVSYDRGKQLADQLG-LEFYETSAKDN 54
>SB_53183| Best HMM Match : Ras (HMM E-Value=0)
Length = 834
Score = 31.9 bits (69), Expect = 0.57
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKI 60
FK+ ++G SGVGK+ ++ RF F + S +E +
Sbjct: 10 FKLLLIGDSGVGKTCILFRFSDDAFNTTFISTIENV 45
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 93 VLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRESID 134
+++GNK D R++S E G++ ++E G + F E S + +I+
Sbjct: 161 MILGNKCDMDDRRIVSRERGEQIAREHG-IRFLETSAKTNIN 201
>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 31.9 bits (69), Expect = 0.57
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 23 KAFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAGD 82
K IA+LG+ VGKS+L+ F F EY +E+ + + ++ N+ ++ E L +
Sbjct: 26 KKLTIAVLGEGRVGKSSLIRGFCGEGFQEEYVPTIEE-FVSKHLLYNDQLWEERLQAEIR 84
Query: 83 SGDTAL--ETPVVLVGNKIDQL 102
+ L E+ G+K+ +L
Sbjct: 85 VAEKKLEIESAAKASGSKLPEL 106
>SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 31.5 bits (68), Expect = 0.75
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 25 FKIAILGQSGVGKSALVVRF 44
FK+ ++G SGVGKS L++RF
Sbjct: 9 FKLLLIGDSGVGKSCLLLRF 28
>SB_8853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 31.5 bits (68), Expect = 0.75
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSA 80
FKI ++G SGVGKS L+ R+ F + + A + V I+ + V +I D+A
Sbjct: 19 FKIVLIGDSGVGKSNLLSRYTKNEFHLGSKATIGVELAHRNVEIEGKTVRAQIWDTA 75
>SB_48712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 91 PVVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRES 132
P +L+GNK+D G R +S EE ++ G V + E S ++S
Sbjct: 322 PFILLGNKVDVEG-RAVSQEEADSWCRQNGGVPYFETSAKDS 362
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 34 GVGKSALVVRFITRRFIGEYDSNLEKIYAFQTV-IDNEMVYFEILDSAGDSGDTALETP 91
GVGKS+L+ RF+ +F + + + + V +D E +I D+AG +L TP
Sbjct: 221 GVGKSSLMNRFVCGKFDTQSFHTIGVEFLNKDVKLDGESYTLQIWDTAGQERFKSLRTP 279
>SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 24 AFKIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVID--NEMVYFEILDSAG 81
+FK+ ++G GVGK++L+ RF T+ + + S+ + V+D + V + D+AG
Sbjct: 11 SFKVLVVGDPGVGKTSLIRRF-TKGYFCDNSSSTVGVDVGTRVLDIHGDRVKLQCWDTAG 69
>SB_1750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 92 VVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRESIDQVWSVFRD 142
+ +V NK D R +ST +G ++ + C F EIS S + V VF +
Sbjct: 125 LAIVANKTDAESQREVSTSDGVALAQSLPC-SFSEISTSTSYEDVERVFTE 174
>SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)
Length = 704
Score = 31.1 bits (67), Expect = 0.99
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRFIGEYDS---NLEKIYAFQTVIDNEMVYFEILDSAG 81
FK I+G SGVGKS LV + F ++ + ++ I+ + DN+ + I D+AG
Sbjct: 351 FKTLIIGNSGVGKSCLVNKLKNPHFDLKFVTSTVSMNDIFWEYFLYDNKKIKLTIGDTAG 410
>SB_37276| Best HMM Match : Ras (HMM E-Value=0.00045)
Length = 100
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 89 ETPVVLVGNKIDQLGDRMISTEEGQRRSKEIGCVCFHEISVRESID 134
E VLVGNK +R +S EG+ +KE+G + F E S ++I+
Sbjct: 8 EAKAVLVGNKCHLDCEREVSVAEGRGLAKELG-LPFFETSAEKNIN 52
>SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31)
Length = 506
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/55 (21%), Positives = 30/55 (54%)
Query: 27 IAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAG 81
+ ++G S GK+AL+ ++ +F +Y++ + + +D E + + D++G
Sbjct: 235 VILVGDSECGKTALLNAYVRNQFNEKYEATVFNSLSTAVEVDGERIELTLWDTSG 289
>SB_17523| Best HMM Match : MMR_HSR1 (HMM E-Value=4.2)
Length = 87
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 8 SPKSSLAKLVLYPKPKAFKIAILGQSGVGKSALVVRFITRRFIGE 52
S +SSL + K +K+ G GVGK++L +R +F G+
Sbjct: 11 SRQSSLESSANHTKVPLYKVVFAGFRGVGKTSLFLRIRDEKFYGK 55
>SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)
Length = 1562
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 3 VSTSTSPKSSLAKLVLYPKPKAFKIAILGQSGVGKSALVVRFITRRFIGEYD 54
+ST T + +L + + PK F I+G + GK+ VV + F G++D
Sbjct: 972 LSTDTETREALRQRGMDPKNIPFNALIVGPTSCGKTQFVVDRLRGPFRGKFD 1023
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 26 KIAILGQSGVGKSALVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAG 81
K+ I+G GK+ L++ F +F Y + + Y +D + V + D+AG
Sbjct: 5931 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 5986
>SB_7861| Best HMM Match : MMR_HSR1 (HMM E-Value=0.96)
Length = 244
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 22 PKAFKIAILGQSGVGKSALVVRFITRRFIGEY 53
P FK+AILG S VGK++L+ + F E+
Sbjct: 185 PVDFKMAILGGSAVGKTSLMRALFKKPFTNEH 216
>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
Length = 1681
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRF 49
+ + ++GQSG GKSAL+ ++ R+
Sbjct: 923 YPVLLVGQSGTGKSALIQNMVSPRY 947
>SB_58218| Best HMM Match : Ras (HMM E-Value=1.4013e-44)
Length = 212
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 25 FKIAILGQSGVGKSALVVRFITRRF 49
FK+ +LG++GVGK++L R F
Sbjct: 12 FKVVLLGEAGVGKTSLFYRLKENHF 36
>SB_38635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 20
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 40 LVVRFITRRFIGEYD 54
L VR +TRR+IGEYD
Sbjct: 2 LTVRLLTRRYIGEYD 16
>SB_1645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 89 ETPVVLVGNKIDQL-GDRMISTEEGQRRSKEIG 120
+ PV++VG K+DQ R+ ST G +EIG
Sbjct: 147 QIPVIVVGTKLDQARPSRLTSTARGMNFVEEIG 179
>SB_35222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 26 KIAILGQSGVGKSALVVR--FITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAGDS 83
+I ILG S VGK+ L+++ + + ++ ++ Y ++D ++ E+ D D+
Sbjct: 20 RIVILGDSTVGKTCLLLQLCYKSNTMSRKHLESISNNYVANIIVDGKVYKLELCDV--DN 77
Query: 84 GDTALETP 91
DT + P
Sbjct: 78 LDTKISKP 85
>SB_33941| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 302
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 160 TDVHTTALSRPLARASSDTTPETNVNPPFYRQWTAMEL 197
TD+ S P+ A T P +NP +R WTAM++
Sbjct: 30 TDLGVALFSMPVWLAYILTGPIWVLNPVLFRVWTAMDI 67
>SB_31085| Best HMM Match : RVT_1 (HMM E-Value=0.0094)
Length = 270
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 121 CVCFHEISVRESIDQVWSVFRDARRFWRVSNKWFRPRGDTDVHTTALSRPLARASSDTTP 180
C+C+H I +RE +++ RD R +++W + A+ + R S T
Sbjct: 127 CICYHTIRLREDCEELQ---RDISRLASWADQW-------SMSFQAIKCNMIRISRKT-- 174
Query: 181 ETNVNPPFYRQWTAMELDEE 200
N+N +Y + A++ EE
Sbjct: 175 RNNINHLYYLEGVALDFVEE 194
>SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 28.3 bits (60), Expect = 7.0
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 40 LVVRFITRRFIGEYDSNLEKIYAFQTVIDNEMVYFEILDSAGDSGDT-ALETPVVLVGNK 98
L R T +G++DS+L++ Y D++ ++ G+S T L+ +V V N
Sbjct: 482 LAFRSWTHDILGDFDSDLKEFYGLGET-DSQ----SSPNTGGESAQTEVLKEAIVRVSNL 536
Query: 99 IDQLGDRMISTEEGQRRSKEIGC---VCFHEISV 129
D+ G +IS E RR +G VC E SV
Sbjct: 537 GDKTG-VIISREGLTRRYSIVGAAELVCVSEDSV 569
>SB_4725| Best HMM Match : Mt_ATP-synt_D (HMM E-Value=1.4)
Length = 465
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 87 ALETPVVLVGNKIDQLGD--RMISTEEGQRRSKEIGCVCFHEISVRESIDQVWSVFRDAR 144
AL +L ++ +GD + ++ Q RS + F E ++ S+DQ V R
Sbjct: 217 ALALLTLLHAKNLEIIGDYRSFVQSKVNQGRSMALRMDQFREQEIKSSVDQSNDVQRSCD 276
Query: 145 RFWRVSNKW 153
+ V KW
Sbjct: 277 YYLEVQRKW 285
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 3 VSTSTSPKSSLAKLVLYPKPKAFKIAILGQSGVGKSALVVRFITRRFIGEYD 54
+ST T + L + + PK F I+G + GK+ +V + F G++D
Sbjct: 604 LSTDTETREVLRQRGMDPKNIPFDALIVGPTSCGKTQFIVDRLRGPFRGKFD 655
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 17 VLYPKPKAFKIAILGQSGVGKSALVVRFI 45
+L P K KI + G +GVGK+ L++ I
Sbjct: 205 LLAPYAKGGKIGLFGGAGVGKTVLIMELI 233
>SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 1 MAVSTSTSPKSSLAKLVLYPKPKAFKIAILGQSGVGKSALV 41
+ + ++ KS + + VL+ P+A G SGVG +A V
Sbjct: 131 LLIGDPSTAKSQMLRYVLHSAPRAIPTTGRGSSGVGLTAAV 171
>SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1411
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 5 TSTSPKSSLAKLVLYPKPKAFKIAILGQSGVGKSALVVRFITRRFIGEYD 54
T+ +P+ A+ + PK F I+G + GK+ VV + F G++D
Sbjct: 780 TAHTPERVSARSGMDPKNMPFNALIVGLTSCGKTQFVVDRLRGPFRGKFD 829
>SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 890
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 163 HTTALSRPLARAS----SDTTPETNVNPPFYRQWTAMELDEEEEATVVRSN 209
H TA P A+ + S +TP+ NVN YR T +E E E + N
Sbjct: 444 HLTAGDSPAAKENTLQTSTSTPDLNVNLDLYRVPTVLEQMENEPPALSARN 494
>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
Length = 1062
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 2 AVSTSTSPKSSLAKLVLYPKPKAFKIAILGQSGVGKSALVVRFITRRFIGEYD 54
A T+ +P+ A+ + PK F I+G + GK+ VV + F G++D
Sbjct: 358 ASGTAHTPERVSARSSMDPKNIPFNALIVGPTPCGKTQFVVDRLRGPFRGKFD 410
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.129 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,742,353
Number of Sequences: 59808
Number of extensions: 292651
Number of successful extensions: 1027
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 98
length of query: 268
length of database: 16,821,457
effective HSP length: 81
effective length of query: 187
effective length of database: 11,977,009
effective search space: 2239700683
effective search space used: 2239700683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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