SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000951-TA|BGIBMGA000951-PA|undefined
         (810 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical pr...    35   0.20 
Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical pr...    35   0.20 
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr...    33   0.61 
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    33   0.81 
AC025727-4|AAG23388.3|  463|Caenorhabditis elegans Hypothetical ...    33   1.1  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    32   1.9  
Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical pr...    32   1.9  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    31   2.5  
Z81146-7|CAB03523.2|  517|Caenorhabditis elegans Hypothetical pr...    31   3.3  
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr...    31   4.3  
Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical pr...    31   4.3  
U46753-7|AAA85763.2|  223|Caenorhabditis elegans Hypothetical pr...    31   4.3  
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    31   4.3  
L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical pr...    31   4.3  
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p...    29   9.9  
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    29   9.9  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    29   9.9  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    29   9.9  
U97007-4|AAB52297.2|  491|Caenorhabditis elegans Hypothetical pr...    29   9.9  
L07143-1|AAB37089.2|  532|Caenorhabditis elegans P granule abnor...    29   9.9  
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella...    29   9.9  
AL032623-14|CAA21504.1|  465|Caenorhabditis elegans Hypothetical...    29   9.9  
AB120730-1|BAC87887.1|  532|Caenorhabditis elegans PGL-2 protein.      29   9.9  

>Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical
           protein W08G11.3b protein.
          Length = 511

 Score = 35.1 bits (77), Expect = 0.20
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 734 NELDSEPLEISNFKSTKMSDFINDLEIKSQMLENEGTTMWNATMMKKEEI 783
           NE+ SE   + N    +M++ IN LE+ ++ML ++ T   NAT  K+EEI
Sbjct: 126 NEIMSER-RMMNDSKVEMANRINGLEVANRMLRDDVTQARNATEAKEEEI 174


>Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical
           protein W08G11.3a protein.
          Length = 510

 Score = 35.1 bits (77), Expect = 0.20
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 734 NELDSEPLEISNFKSTKMSDFINDLEIKSQMLENEGTTMWNATMMKKEEI 783
           NE+ SE   + N    +M++ IN LE+ ++ML ++ T   NAT  K+EEI
Sbjct: 125 NEIMSER-RMMNDSKVEMANRINGLEVANRMLRDDVTQARNATEAKEEEI 173


>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
           protein C50C3.2 protein.
          Length = 2107

 Score = 33.5 bits (73), Expect = 0.61
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 10/163 (6%)

Query: 146 TLKDCNPIQNDDRAVTFNIDYRLNQRRILMRRDVINKTDVFPAENKKTESQISLDDQSCA 205
           T+K CN    +DR  T N++  + Q     ++ VI  +  F   ++++   ++ +D    
Sbjct: 376 TMKTCNEFL-EDRIQTINMEKLIFQTH---QKAVILAS--FLQNHEESPEDMNAEDIEKE 429

Query: 206 VSVAAEVRSIMDKILNSVEISIEQDTFFTGADDLERINPYQGRN-HDENYYKEVQGKIIN 264
           + V   +      ++  +E +IE D      + L +++ Y  +  +D N  KEV    +N
Sbjct: 430 IRVIDGITVRCTSVVEQIE-NIE-DELRQKPEQLNQLSVYASKQVNDLNEMKEVLKTTVN 487

Query: 265 MEKNDRQ-LAKRMIKLQNISENKEHDDCSVIEPEDKNIKFEII 306
             K   Q L      L N  E ++H D  +   +   +K EI+
Sbjct: 488 SRKAILQRLLDVTYFLDNCCETRKHTDTMLSNVKSSRVKLEIV 530


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 33.1 bits (72), Expect = 0.81
 Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 9/139 (6%)

Query: 180  INKTDVFPAENKKTESQISLDDQSCAVSVAAE--VRSIMDKILNSVEISIEQDTFFTGAD 237
            + K +  P     ++   +++DQ   + V  +  V+  +DK+  + E   E D      D
Sbjct: 2649 LKKIEDMPISAVGSDVLATIEDQILQMPVQYQPSVKETLDKLKQAKE---EDDKLAGVYD 2705

Query: 238  DLERINPYQGRNHDENYYKEVQGKIINMEKNDRQLAKRMIKLQNISENKEHDDCSVIEPE 297
            +LE+I     R++D     ++  K+ ++ K+  Q+A+   K+++I   K  D  + I+  
Sbjct: 2706 ELEKIAKLPARDYDNKLLAKIDEKLNSLPKD--QIAETHRKVEDIKVTKA-DIVAQIDVL 2762

Query: 298  DKNIKFEIIDDNYENDLGE 316
            DK +  + ID++  N + E
Sbjct: 2763 DK-LPAKDIDEHLLNSIEE 2780


>AC025727-4|AAG23388.3|  463|Caenorhabditis elegans Hypothetical
           protein Y73E7A.2 protein.
          Length = 463

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 28/151 (18%), Positives = 65/151 (43%), Gaps = 10/151 (6%)

Query: 164 IDYRLNQRRILMRRDVINKTDVFPAENKKTESQISLDDQSCAVSVAAEVRSIMDKILNSV 223
           ID ++ + R        N+T +         +  S+ ++   +    +V +  +K+L  V
Sbjct: 285 IDEKMEKFRATTLTKWYNRTKILNTPKSMNNTDFSVFEKGSILGQINKVLADEEKLLKKV 344

Query: 224 EISIEQDTFFTG-ADDLERINPYQGRNHDENYYK-------EVQGKIINMEKNDRQLAKR 275
             +        G +D  E ++P      D ++Y+       E + ++ N  ++   + + 
Sbjct: 345 RTNRSGKPRIGGKSDSPESLDPETF--DDSDFYQILLKQMLEARNQMSNNSQDGADMTRS 402

Query: 276 MIKLQNISENKEHDDCSVIEPEDKNIKFEII 306
            ++LQ +  NK+  D S +  +D+ +K+E I
Sbjct: 403 YMELQTMFSNKKKRDVSQLSSKDRRLKYEPI 433


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 187 PAENKKTESQISLDDQSCAVSVAAEVRSIMDKILNSVEISIEQDTFFTGADDLERINPYQ 246
           P E  + ++     D+     V    +SI D +  ++E S E +   T  + +      +
Sbjct: 675 PDETHEEDADEEPVDEEMDTEVVVRDKSI-DPVYQAMETS-EAEVAETKEESVPVEEDEE 732

Query: 247 GRNHDENYY-----KEVQGKIINMEKNDRQLAKRMIKLQNISENKEH 288
             NHDE+       KE Q   IN    D + +K+M K +   +NK+H
Sbjct: 733 PENHDEDVEDHKKEKESQSSTINTADEDDESSKKMKKHKKSKKNKKH 779


>Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical
           protein D2013.5 protein.
          Length = 934

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 141 VTALGTLKDCNPIQNDDRAVTFNIDYRLNQRRILMRRDVINKTDVFPAENKKTESQISLD 200
           ++A  + KD  P +  D         +L +  +  +     + +    ENK  + ++ L 
Sbjct: 190 MSAFSSKKD-EPEEKKDNVSAEERIQKLQEEMLKTQSQYQRELERLEKENKVLKQRLLLS 248

Query: 201 DQSCAVSVAAEVRSIMDKILNSVEISIEQDTFFTGADDLERI 242
           D   A+ +    RS++D     +++  E D+ +  +D+L R+
Sbjct: 249 DDKAAIRLKRLKRSLIDMYSEVLDLLNEYDSSYNTSDNLPRV 290


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 264 NMEKNDRQLAKRMIKLQNISENKEHDDCSVIEPEDKN------IKFEIIDDNYEN 312
           N +K +R+LA    +++ + E  E+DD   +E ED N      I  ++  D+YEN
Sbjct: 272 NRQKEERRLAVERREVRIVIEEDEYDDDEEVEYEDSNNVNPPIIAVQLHADSYEN 326


>Z81146-7|CAB03523.2|  517|Caenorhabditis elegans Hypothetical
           protein K10D11.4 protein.
          Length = 517

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 214 SIMDKILNSVEIS--IEQDTFFTGADDLERINPYQGRNHDENYYKEVQGKI 262
           +++D+ L SVEI    E   +F G  + +++  Y  +N+  N  +++QG I
Sbjct: 309 NLIDEYLISVEIDKGAELQVYFEGLKETQKVATYTSKNNGTNLPQKLQGSI 359


>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
           protein C38D9.3 protein.
          Length = 1496

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 475 RIKVTVLDKKTLSDTELSPEKNTKKLPTINIKRTNDFYHIGSNGNIKTVTNWNPHLLVDN 534
           R+  T L  +  S+  ++P+  +K L   N+K+++ ++H+ +  N+   TN++ +   DN
Sbjct: 796 RVPPTDLPTEIASNCSINPKVCSKSL---NLKKSHRYHHLNTQVNLNNHTNFDQNCSSDN 852


>Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical
           protein F13B12.1 protein.
          Length = 511

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 262 IINMEKNDRQLAKRMIKLQNISENKEHDDCSVIEPEDKNIKFEIIDDNYENDLGEMKDIN 321
           +I+ + +D +  KR + L   S++ +H+  S  EP  KN+  +  DD+ E+   +  D++
Sbjct: 110 LIDSDASDAEGKKRRVMLD--SDDSDHEGTSKKEPTTKNLFGDDSDDDDEDRPKKTNDLD 167

Query: 322 EW 323
           E+
Sbjct: 168 EF 169


>U46753-7|AAA85763.2|  223|Caenorhabditis elegans Hypothetical
           protein C34F11.8 protein.
          Length = 223

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 731 ESENELDSEPLEISNFKSTKMSDFINDLEIKSQMLE 766
           E E E   EP +  NFK+++ SD+++D EI  + LE
Sbjct: 57  ELEKERTEEPTDSGNFKASRRSDWVDD-EIDEKDLE 91


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
           protein F59A6.5 protein.
          Length = 1286

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 712 VLCGIIQVPKNFVFEWQVLESENELDSEPLEISNFKSTKMSDFINDLEIKSQMLENEGTT 771
           VL  + Q+  +F F   V ++ +++  E  E     +  + + +NDL+IK++ L  E + 
Sbjct: 238 VLSEVRQLSAHFEFLTPVRKNASKI-RELDEYHQLSAKVIEESMNDLKIKNETLTKELSD 296

Query: 772 MWNATMMKKEEILSSLTDTNLTESLTEKLKVIKSMAED 809
                 MK EE L  L  T  T SL +  +  K + E+
Sbjct: 297 KTELVKMKNEE-LEDLRQTT-TASLGDSEQATKYLHEE 332


>L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical
           protein C14B9.2 protein.
          Length = 618

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 247 GRNHDENYYKEVQGKIINMEKNDRQLAKRMIKLQNISENKEHDDCSVIE--PEDKNIKFE 304
           GR  D N  +E  G I  M    +  AK++ KL+++      DD ++I     + +  FE
Sbjct: 231 GRRFDYNGPREAAGIIKYMTDQSKPAAKKLPKLKDVERFMSKDDVTIIGFFATEDSTAFE 290

Query: 305 IIDDNYE 311
              D+ E
Sbjct: 291 AFSDSAE 297


>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
           protein F23B2.4 protein.
          Length = 1192

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 23  HVLVNGSKGGEQKIIDQINEKISIKKTTVAMKKNHRKKGL---LQDSL 67
           H LV      + K+  Q+++KI I K T  + KN R+K L   LQD++
Sbjct: 346 HDLVKKMSLYDTKLAVQLSDKIQIYKQTGGVSKNERRKQLKYTLQDTI 393


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 188 AENKKTESQISLDD--QSCAVSVAAEVRSIMDKILN-SVEISIEQDTFFTGADDLERINP 244
           AE +K  S+  LD+   SC  +VAA ++S   K+     EI + ++      ++LE+   
Sbjct: 188 AEAEKMHSEKKLDEYMNSCPEAVAASIKSDSAKVKELEYEIRVAKEVSVRLHNELEQTEE 247

Query: 245 YQGRNHDENYYKEVQGKIINMEKNDRQ 271
            + +  DE +Y + + + I  +   R+
Sbjct: 248 KRCKLEDEVFYLKEKVREIQTQNKWRE 274


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 188 AENKKTESQISLDD--QSCAVSVAAEVRSIMDKILN-SVEISIEQDTFFTGADDLERINP 244
           AE +K  S+  LD+   SC  +VAA ++S   K+     EI + ++      ++LE+   
Sbjct: 188 AEAEKMHSEKKLDEYMNSCPEAVAASIKSDSAKVKELEYEIRVAKEVSVRLHNELEQTEE 247

Query: 245 YQGRNHDENYYKEVQGKIINMEKNDRQ 271
            + +  DE +Y + + + I  +   R+
Sbjct: 248 KRCKLEDEVFYLKEKVREIQTQNKWRE 274


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 188 AENKKTESQISLDD--QSCAVSVAAEVRSIMDKILN-SVEISIEQDTFFTGADDLERINP 244
           AE +K  S+  LD+   SC  +VAA ++S   K+     EI + ++      ++LE+   
Sbjct: 188 AEAEKMHSEKKLDEYMNSCPEAVAASIKSDSAKVKELEYEIRVAKEVSVRLHNELEQTEE 247

Query: 245 YQGRNHDENYYKEVQGKIINMEKNDRQ 271
            + +  DE +Y + + + I  +   R+
Sbjct: 248 KRCKLEDEVFYLKEKVREIQTQNKWRE 274


>U97007-4|AAB52297.2|  491|Caenorhabditis elegans Hypothetical
           protein ZC196.6 protein.
          Length = 491

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 19/152 (12%)

Query: 178 DVINKTDVFPAENKKTESQISLDDQSCAVSVAAEVRSIMDKILNSVEISIEQDTFFTGAD 237
           DV  K DV  +   + E    +DD    +   +EVR  + K   +V +  E +  F  + 
Sbjct: 210 DVTAKEDVDSSIELENEDNCQIDDD---IKNTSEVRKEITKFEETVAVPDENEQSFVNSS 266

Query: 238 DLERIN-PYQGRNHDENYYKEV--------QGKIIN--MEKNDRQLAKRM----IKLQNI 282
           +    N   +  N D+N   +V         G +    + +N+R L +      I+  NI
Sbjct: 267 NFVDPNCEKETSNEDQNQQNDVVAEETMEKPGNLTRSFLTENNRLLIEEACLDGIEHSNI 326

Query: 283 -SENKEHDDCSVIEPEDKNIKFEIIDDNYEND 313
            +E +E +    +  ED N K +  D+N  ND
Sbjct: 327 VAEIREDEKTDEVAWEDLNAKEKTDDENQTND 358


>L07143-1|AAB37089.2|  532|Caenorhabditis elegans P granule
           abnormality protein 2 protein.
          Length = 532

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 9/153 (5%)

Query: 654 PENDCEKITEVWIQCSNVLNFGWIKGTRNSENLISLQFPGFYPTSYYQESEVFTKINGVL 713
           P++  + I  VW++ + +     +K + N +  +  Q     P S      +  K+   +
Sbjct: 329 PQSFAKAIKNVWVRHAIIGILDSLKFSLNKD--VFNQLVPLIPGSQVSNDVISGKVENAI 386

Query: 714 CGIIQVPKNFVFEWQVLESENELDSEPLEISNFKSTKMSDFINDLEIKSQMLENEGTTMW 773
              I + K F  E     S + ++  P   S   S ++++ IN +EI    +E E  T+ 
Sbjct: 387 SCAIWIVKTFGTEG----SRDSIEKLPWFDS---SVELTELINSIEIAVTSVEVEDQTVN 439

Query: 774 NATMMKKEEILSSLTDTNLTESLTEKLKVIKSM 806
              + +K+ +  +L     TE  +EK  +  S+
Sbjct: 440 FRKIPQKDWLDGNLQKALKTEPTSEKFGISNSL 472


>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
           transport protein protein.
          Length = 1192

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 23  HVLVNGSKGGEQKIIDQINEKISIKKTTVAMKKNHRKKGL---LQDSL 67
           H LV      + K+  Q+++KI I K T  + KN R+K L   LQD++
Sbjct: 346 HDLVKKMSLYDTKLAVQLSDKIQIYKQTGGVSKNERRKQLKYTLQDTI 393


>AL032623-14|CAA21504.1|  465|Caenorhabditis elegans Hypothetical
           protein Y43F8B.13 protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 401 ESLGIQTIKTILHLR-KQNKTRGIWITTDKIDNHKLIHNPMSFIP 444
           E+  +Q I+TIL+   K  + R  W  T KI N+KL +N ++F+P
Sbjct: 419 ENADLQNIETILNFEFKIIEHRNDW--TVKIGNNKLPYNRVAFLP 461


>AB120730-1|BAC87887.1|  532|Caenorhabditis elegans PGL-2 protein.
          Length = 532

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 9/153 (5%)

Query: 654 PENDCEKITEVWIQCSNVLNFGWIKGTRNSENLISLQFPGFYPTSYYQESEVFTKINGVL 713
           P++  + I  VW++ + +     +K + N +  +  Q     P S      +  K+   +
Sbjct: 329 PQSFAKAIKNVWVRHAIIGILDSLKFSLNKD--VFNQLVPLIPGSQVSNDVISGKVENAI 386

Query: 714 CGIIQVPKNFVFEWQVLESENELDSEPLEISNFKSTKMSDFINDLEIKSQMLENEGTTMW 773
              I + K F  E     S + ++  P   S   S ++++ IN +EI    +E E  T+ 
Sbjct: 387 SCAIWIVKTFGTEG----SRDSIEKLPWFDS---SVELTELINSIEIAVTSVEVEDQTVN 439

Query: 774 NATMMKKEEILSSLTDTNLTESLTEKLKVIKSM 806
              + +K+ +  +L     TE  +EK  +  S+
Sbjct: 440 FRKIPQKDWLDGNLQKALKTEPTSEKFGISNSL 472


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.132    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,873,692
Number of Sequences: 27539
Number of extensions: 872025
Number of successful extensions: 1980
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1972
Number of HSP's gapped (non-prelim): 26
length of query: 810
length of database: 12,573,161
effective HSP length: 87
effective length of query: 723
effective length of database: 10,177,268
effective search space: 7358164764
effective search space used: 7358164764
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)

- SilkBase 1999-2023 -