GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000951-TA|BGIBMGA000951-PA|undefined
         (810 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   3.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   3.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   4.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   9.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 274 KRMIKLQNISENKEHDDCSVIEPEDKNIKFEIIDD 308
           K ++   N+ +N++HD+  +I P+  ++     DD
Sbjct: 410 KDILHEHNVDDNEDHDENMIIPPKKSDMSNMQSDD 444


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 254 YYKEVQGKIINMEKNDRQLAKRM 276
           YY ++   ++N EK  R+ AK+M
Sbjct: 230 YYSQIVSHVVNHEKALREQAKKM 252


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 175 MRRDVINKTDVFPAENKKTESQISLDDQSCAVSVAAEVRSIMDK----ILNSVEISIEQD 230
           ++RD+IN  DV P   +  E    + ++    +V  ++  I +     ++N  +   E  
Sbjct: 150 VKRDIINPEDVIPI-RRTGEGSKPIFEREEIKNVLTKINKIEEHDTVLVVNIKKSGNESK 208

Query: 231 TFFTGADDLERINPYQGRNHDENYYKEVQGKIINMEKNDRQLAKRMIKLQNISE 284
            + T ++ L   +   G  H  ++Y   +    +  +  ++  +R  KL N  E
Sbjct: 209 KYATSSNSLR--SRTHGFQHTSSHYSRERSCSRDRNREYKEKDRRYEKLHNEKE 260


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 501 PTINIKRTNDFYHIGSNGNIKTVTNWNPHLLVDN 534
           PTI  KRT  F    S+   K   NW     +DN
Sbjct: 9   PTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDN 42


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.132    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,172
Number of Sequences: 429
Number of extensions: 9852
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 810
length of database: 140,377
effective HSP length: 63
effective length of query: 747
effective length of database: 113,350
effective search space: 84672450
effective search space used: 84672450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)