Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000949-TA|BGIBMGA000949-PA|undefined
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.76 
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    28   1.7  
SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub...    28   1.7  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    28   1.7  
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    26   9.3  

>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 157 LSSNCLVEGRGLGSVVCLGWFYSNANLHLAVGRNDGSVQLYLIDVENLHLKPRLKFTY 214
           +S NC++    +   V L +   N ++HL V   DG+V +Y   +    +K    +TY
Sbjct: 190 ISINCMMSRENVARTVLL-FALDNQSIHLVVDMTDGNVPIYKA-IAGFVVKGESSYTY 245


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 20  NEVKGYTKKGKVFFSIETALSEPVTSMCVFGGDLILCSGRTI--TFYRDSKEHQSYVCKD 77
           ++ KG++K   VFF I  +L   +T+  + G   +L +   +            S V  +
Sbjct: 318 SKTKGFSKISNVFFVIFLSLITSLTAYAILGESELLFNPMELFPQVINSCSPSSSTVLCE 377

Query: 78  RVLDMAAFIAPNNAKVRLLLLIAHKGAGILENGHLVAHIAISS 120
               + A +   +A + LLL  A  GA I   G +V  +AI +
Sbjct: 378 TTFWVTAIVLFTSALLGLLLTSATFGAAI-PTGIIVPSLAIGA 419


>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
           subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 125

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 21  EVKGYTKKGKVFFSIETALSEPVTSMCVFGGDLILCSGRTITFYRDSKEH 70
           E   Y   GKV+  +E A  E V+    FGG L+   G     YR S +H
Sbjct: 70  EAADYIMYGKVY-RVEEAKDEKVSVYVSFGGLLMAIEGSHRKLYRLSLDH 118


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 234 LDMLFIYCSKKLKLLTDSAAVLSVCSSQDSASDLLATVRCQAGTRRIWLR 283
           L   F Y S   ++   +  +  V +  + A  LLA  R ++GT RIW +
Sbjct: 601 LGRAFEYNSNSEEIWLAAVRIEFVNNENERARKLLARARIESGTERIWTK 650


>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 198 LIDVENLHLKPRLK--FTYMSGATREGWQEVDITSAVPLD 235
           L+D   L+L  R++  F+ +  A R G  EV ITSA PLD
Sbjct: 115 LLDNHRLYLLTRIQKQFSTLMRAKR-GEIEVKITSATPLD 153


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,407
Number of Sequences: 5004
Number of extensions: 61392
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 5
length of query: 354
length of database: 2,362,478
effective HSP length: 73
effective length of query: 281
effective length of database: 1,997,186
effective search space: 561209266
effective search space used: 561209266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)