GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000949-TA|BGIBMGA000949-PA|undefined
         (354 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.5  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    23   4.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.9  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   7.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   7.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   7.8  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 16/117 (13%)

Query: 34  SIETALSEPVTSMCVFGGDLILCSGRTITFYRDSKEHQSYVCKDRVLDMAAFIAPNNAKV 93
           +IE  LS+P  + CV    ++ C       YR     + + CK   +   AF    N K 
Sbjct: 126 NIEHKLSDP--NQCVICHRVLSCKSALQMHYRTHTGERPFKCK---ICGRAFTTKGNLKT 180

Query: 94  RLLLLIAHKGAGILENG---H--------LVAHIAISSGPSRLATPPVAQVAEIKCF 139
            + +  A     +L      H        L  HI + +G     TP   Q AE+K F
Sbjct: 181 HMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDF 237


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory
          receptor candidate 31 protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 14 IFAASGNEVKGYTKKGKVFFSIETALSEPVTSMCVFG 50
          +  A+GN +   + K   FF++E  L +   ++ +FG
Sbjct: 22 LVVATGNIIHTTSNKQLQFFAVEHLLIQCYIAVSIFG 58


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 320 PALPYYSQHEEFDENNDHSIKLVDTNQYIIFE 351
           P + +Y  ++     N H IK +   +YI FE
Sbjct: 129 PIIAFY--YKPIKTLNGHEIKFIRKEEYISFE 158


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 299 VLIYALPTGAPRVARLLSMKLPALPYYSQHE 329
           + +Y+   G  +  R+ +  LP L  ++ HE
Sbjct: 141 ISVYSSSVGYTQYVRIAAKGLPTLKLFALHE 171


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 52 DLILCSGRTITFYRDSKEHQSYVCK 76
          ++  C G    F R  + ++ YVCK
Sbjct: 51 NIFACDGCAGFFKRSIRRNRQYVCK 75


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 52 DLILCSGRTITFYRDSKEHQSYVCK 76
          ++  C G    F R  + ++ YVCK
Sbjct: 51 NIFACDGCAGFFKRSIRRNRQYVCK 75


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,788
Number of Sequences: 317
Number of extensions: 3151
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 354
length of database: 114,650
effective HSP length: 57
effective length of query: 297
effective length of database: 96,581
effective search space: 28684557
effective search space used: 28684557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)