BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000949-TA|BGIBMGA000949-PA|undefined (354 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_01_0751 - 6759380-6759686,6759770-6759859,6759964-6760211,676... 30 3.2 06_03_1302 - 29163974-29166907 30 3.2 02_02_0343 + 9163976-9165220 29 4.3 03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 29 5.6 01_03_0021 + 11720744-11720898,11720991-11721246 29 5.6 03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663,256... 29 7.5 01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056... 29 7.5 12_01_0647 - 5485100-5487028 28 9.9 04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 28 9.9 >12_01_0751 - 6759380-6759686,6759770-6759859,6759964-6760211, 6760268-6760328,6760504-6760523,6760695-6760818, 6760941-6760987,6761744-6761866 Length = 339 Score = 29.9 bits (64), Expect = 3.2 Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 41 EPVTSMCVFGGDLILCSGRTITFYRDSKEH 70 E V S+C GGD + C GR + + +++H Sbjct: 43 EDVCSICDDGGDFLCCEGRCLRSFHATEKH 72 >06_03_1302 - 29163974-29166907 Length = 977 Score = 29.9 bits (64), Expect = 3.2 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 11/124 (8%) Query: 161 CL-VEGRGLGSVVCLGWFYSNANLHLAVGRNDGSVQLYLIDVENLHLKPRLKFTYMSGAT 219 CL + G+ V + F +L+LA D SV + + LHL+ +SGAT Sbjct: 682 CLDIRDTGITEVNDVSEFKEMRHLYLANSFRDQSVLIKEGLLSLLHLQT------LSGAT 735 Query: 220 REGWQEVDITSAVPLDMLFIYCSKKLKLLTDSAAVLSVCSSQDSAS--DLL--ATVRCQA 275 E E VP + +Y KL A++ D+ + DLL T+ C A Sbjct: 736 HEVPSERKKAGMVPFEQELLYLKLLRKLSVKKASISCSKGISDAINKMDLLQSLTITCAA 795 Query: 276 GTRR 279 G +R Sbjct: 796 GEKR 799 >02_02_0343 + 9163976-9165220 Length = 414 Score = 29.5 bits (63), Expect = 4.3 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 283 RLRVASTNSTVLESTRVLIYALPTGAPRVARLLSMKLPALPYYS--QHEEFDENNDHSIK 340 R +V S S LE+ +V + P + LL+ L L + S Q E FDE +H+++ Sbjct: 272 RTKVLSAGSLQLEALKVDNIS-GVLVPSICSLLAANLHKLIFKSDLQMESFDEEQEHALQ 330 Query: 341 LVDTNQYIIF 350 L+ + + + F Sbjct: 331 LLTSLKQLYF 340 >03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945, 30550422-30550538,30550873-30551111,30552279-30552365, 30552732-30552831,30553319-30553532,30553617-30553777 Length = 1349 Score = 29.1 bits (62), Expect = 5.6 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 30 KVFFSIETALSEP---VTSMCVFGGDLILCSGRTITFYRDSKEHQSYVCKD 77 + FF I T +P +C GG+LI C G TF+ E + + +D Sbjct: 944 QAFFPISTETDDPNDDTCGICGDGGNLICCDGCPSTFHMSCLELEEHSRQD 994 >01_03_0021 + 11720744-11720898,11720991-11721246 Length = 136 Score = 29.1 bits (62), Expect = 5.6 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 217 GATREGWQEVDITSAVPLDMLFIYCSKKLKLLT--DSAAVLSVCSSQDSASDLLA 269 G +E WQ+ +T P M + ++ + DS+AV+ +C+ + + SD+ A Sbjct: 16 GEAKERWQQARMTEGKPRTMATVGGDWEVTRSSGGDSSAVVDICAKEAACSDVSA 70 >03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663, 2560190-2560326,2560467-2560626,2560828-2561106, 2561750-2561920,2562636-2562717,2563397-2563623, 2563682-2563727,2564199-2564281,2564376-2564492, 2564965-2565036 Length = 707 Score = 28.7 bits (61), Expect = 7.5 Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 5 IPFGTQPDKIFAASGNEVKGYTKKGKVFFSIETALSEPVTSMCVFGGDLILCSGRTITFY 64 IP + S ++ GK ++ + E TS V+ GD+I+ G+ F Sbjct: 320 IPMAPGKTRSIVCSARNFFQFSMPGKAWWQLVPRWYEHWTSNLVYDGDMIVLQGQEKIFL 379 Query: 65 RDSKE 69 SKE Sbjct: 380 SASKE 384 >01_06_0895 - 32804433-32804744,32804948-32805163,32805301-32805642, 32805778-32806020,32806130-32806582,32806898-32807113, 32808360-32808432,32808750-32808790,32809027-32809118, 32809222-32809333,32810003-32810078,32810154-32810301, 32811195-32811336,32812120-32812196,32813568-32813619 Length = 864 Score = 28.7 bits (61), Expect = 7.5 Identities = 13/37 (35%), Positives = 20/37 (54%) Query: 153 EETTLSSNCLVEGRGLGSVVCLGWFYSNANLHLAVGR 189 E T S+CL EGR +G GW+ + +H+ G+ Sbjct: 621 ETGTFFSSCLTEGRIVGFHGRDGWYIDSIGVHVLEGK 657 >12_01_0647 - 5485100-5487028 Length = 642 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 63 FYRDSKEHQSYVCKDRVLDMAAFIA 87 F R+ EH YV D + D+AAF++ Sbjct: 513 FGREDDEHAYYVMNDMMYDLAAFVS 537 >04_04_0927 + 29467121-29467168,29467518-29467604,29468180-29468269, 29468547-29468741,29469056-29471080,29471208-29471354, 29471520-29471923,29472015-29472144 Length = 1041 Score = 28.3 bits (60), Expect = 9.9 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%) Query: 118 ISSGPSRLATPPVAQVAEIKCFYGAADGSVGIITYEETTLSSNCLVE---GRGLGSVVCL 174 ISSG S +A + ++ + A+G +G+ Y SS LVE GR + SVVC Sbjct: 540 ISSGSSHVAV--LTMSGKVFTWGKGAEGQLGLGDYSNR--SSPTLVEALEGRDVESVVCG 595 Query: 175 GWFYSNANLHLAVGRNDGSV 194 F + LH + D SV Sbjct: 596 FNFTAAICLHKTMSMKDQSV 615 Database: rice Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,286,931 Number of Sequences: 37544 Number of extensions: 421386 Number of successful extensions: 897 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 892 Number of HSP's gapped (non-prelim): 10 length of query: 354 length of database: 14,793,348 effective HSP length: 83 effective length of query: 271 effective length of database: 11,677,196 effective search space: 3164520116 effective search space used: 3164520116 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 60 (28.3 bits)
- SilkBase 1999-2023 -