Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000949-TA|BGIBMGA000949-PA|undefined
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0751 - 6759380-6759686,6759770-6759859,6759964-6760211,676... 30 3.2
06_03_1302 - 29163974-29166907 30 3.2
02_02_0343 + 9163976-9165220 29 4.3
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 29 5.6
01_03_0021 + 11720744-11720898,11720991-11721246 29 5.6
03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663,256... 29 7.5
01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056... 29 7.5
12_01_0647 - 5485100-5487028 28 9.9
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 28 9.9
>12_01_0751 -
6759380-6759686,6759770-6759859,6759964-6760211,
6760268-6760328,6760504-6760523,6760695-6760818,
6760941-6760987,6761744-6761866
Length = 339
Score = 29.9 bits (64), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 41 EPVTSMCVFGGDLILCSGRTITFYRDSKEH 70
E V S+C GGD + C GR + + +++H
Sbjct: 43 EDVCSICDDGGDFLCCEGRCLRSFHATEKH 72
>06_03_1302 - 29163974-29166907
Length = 977
Score = 29.9 bits (64), Expect = 3.2
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 161 CL-VEGRGLGSVVCLGWFYSNANLHLAVGRNDGSVQLYLIDVENLHLKPRLKFTYMSGAT 219
CL + G+ V + F +L+LA D SV + + LHL+ +SGAT
Sbjct: 682 CLDIRDTGITEVNDVSEFKEMRHLYLANSFRDQSVLIKEGLLSLLHLQT------LSGAT 735
Query: 220 REGWQEVDITSAVPLDMLFIYCSKKLKLLTDSAAVLSVCSSQDSAS--DLL--ATVRCQA 275
E E VP + +Y KL A++ D+ + DLL T+ C A
Sbjct: 736 HEVPSERKKAGMVPFEQELLYLKLLRKLSVKKASISCSKGISDAINKMDLLQSLTITCAA 795
Query: 276 GTRR 279
G +R
Sbjct: 796 GEKR 799
>02_02_0343 + 9163976-9165220
Length = 414
Score = 29.5 bits (63), Expect = 4.3
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 283 RLRVASTNSTVLESTRVLIYALPTGAPRVARLLSMKLPALPYYS--QHEEFDENNDHSIK 340
R +V S S LE+ +V + P + LL+ L L + S Q E FDE +H+++
Sbjct: 272 RTKVLSAGSLQLEALKVDNIS-GVLVPSICSLLAANLHKLIFKSDLQMESFDEEQEHALQ 330
Query: 341 LVDTNQYIIF 350
L+ + + + F
Sbjct: 331 LLTSLKQLYF 340
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 30 KVFFSIETALSEP---VTSMCVFGGDLILCSGRTITFYRDSKEHQSYVCKD 77
+ FF I T +P +C GG+LI C G TF+ E + + +D
Sbjct: 944 QAFFPISTETDDPNDDTCGICGDGGNLICCDGCPSTFHMSCLELEEHSRQD 994
>01_03_0021 + 11720744-11720898,11720991-11721246
Length = 136
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 217 GATREGWQEVDITSAVPLDMLFIYCSKKLKLLT--DSAAVLSVCSSQDSASDLLA 269
G +E WQ+ +T P M + ++ + DS+AV+ +C+ + + SD+ A
Sbjct: 16 GEAKERWQQARMTEGKPRTMATVGGDWEVTRSSGGDSSAVVDICAKEAACSDVSA 70
>03_01_0329 +
2558726-2559112,2559214-2559449,2559537-2559663,
2560190-2560326,2560467-2560626,2560828-2561106,
2561750-2561920,2562636-2562717,2563397-2563623,
2563682-2563727,2564199-2564281,2564376-2564492,
2564965-2565036
Length = 707
Score = 28.7 bits (61), Expect = 7.5
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 5 IPFGTQPDKIFAASGNEVKGYTKKGKVFFSIETALSEPVTSMCVFGGDLILCSGRTITFY 64
IP + S ++ GK ++ + E TS V+ GD+I+ G+ F
Sbjct: 320 IPMAPGKTRSIVCSARNFFQFSMPGKAWWQLVPRWYEHWTSNLVYDGDMIVLQGQEKIFL 379
Query: 65 RDSKE 69
SKE
Sbjct: 380 SASKE 384
>01_06_0895 -
32804433-32804744,32804948-32805163,32805301-32805642,
32805778-32806020,32806130-32806582,32806898-32807113,
32808360-32808432,32808750-32808790,32809027-32809118,
32809222-32809333,32810003-32810078,32810154-32810301,
32811195-32811336,32812120-32812196,32813568-32813619
Length = 864
Score = 28.7 bits (61), Expect = 7.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 153 EETTLSSNCLVEGRGLGSVVCLGWFYSNANLHLAVGR 189
E T S+CL EGR +G GW+ + +H+ G+
Sbjct: 621 ETGTFFSSCLTEGRIVGFHGRDGWYIDSIGVHVLEGK 657
>12_01_0647 - 5485100-5487028
Length = 642
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 63 FYRDSKEHQSYVCKDRVLDMAAFIA 87
F R+ EH YV D + D+AAF++
Sbjct: 513 FGREDDEHAYYVMNDMMYDLAAFVS 537
>04_04_0927 +
29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 28.3 bits (60), Expect = 9.9
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 118 ISSGPSRLATPPVAQVAEIKCFYGAADGSVGIITYEETTLSSNCLVE---GRGLGSVVCL 174
ISSG S +A + ++ + A+G +G+ Y SS LVE GR + SVVC
Sbjct: 540 ISSGSSHVAV--LTMSGKVFTWGKGAEGQLGLGDYSNR--SSPTLVEALEGRDVESVVCG 595
Query: 175 GWFYSNANLHLAVGRNDGSV 194
F + LH + D SV
Sbjct: 596 FNFTAAICLHKTMSMKDQSV 615
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.136 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,286,931
Number of Sequences: 37544
Number of extensions: 421386
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 10
length of query: 354
length of database: 14,793,348
effective HSP length: 83
effective length of query: 271
effective length of database: 11,677,196
effective search space: 3164520116
effective search space used: 3164520116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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