GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000949-TA|BGIBMGA000949-PA|undefined
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42162| Best HMM Match : 7tm_1 (HMM E-Value=0.0047)                  36   0.066
SB_33466| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.46 
SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)                 32   0.61 
SB_22361| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)           29   7.6  

>SB_42162| Best HMM Match : 7tm_1 (HMM E-Value=0.0047)
          Length = 419

 Score = 35.5 bits (78), Expect = 0.066
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 267 LLATVRCQAGTRRIWLRLRVASTNSTVLESTRVLIYALPTGAPRVARLLSMKLPALPYYS 326
           LLAT RCQA T R+ L++R        L++     Y  P   P+  ++    +  L  + 
Sbjct: 188 LLATYRCQANTTRLELKIRSIEGQYGTLQA-----YITPRIQPKTCQVRQYPIKPLSLHQ 242

Query: 327 QHEEFDENNDHSIKLVDTNQYI 348
           +   FDE+N    ++++   Y+
Sbjct: 243 RTHVFDESN---YRVIEPKMYV 261


>SB_33466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 32.7 bits (71), Expect = 0.46
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 267 LLATVRCQAGTRRIWLRLRVASTNSTVLESTRVLIYALPTGAPRVARLLSMKLPALPYYS 326
           LLAT RCQA T R+ L++R        L++     Y  P   P+  ++    +  L  + 
Sbjct: 5   LLATYRCQANTTRLELKIRSIEGQYGTLQA-----YITPRIQPKTCQVRQYPIKPLSLHQ 59

Query: 327 QHEEFDEN 334
           +   FDE+
Sbjct: 60  RTHVFDES 67


>SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)
          Length = 676

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 241 CSKKLKLLTDSAAVLSVCSSQD---SASDLLATVRCQAGTRRIWLRL 284
           CSK +    D A VL+ C S D    A+ LLA +R  A   R+WLRL
Sbjct: 331 CSKSVNA-DDLAQVLNQCLSVDYGVKANSLLAAIRDGAKFGRVWLRL 376


>SB_22361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 261 QDSASDLLATVRCQAGTRRIWLRLRVAS-TNSTVLESTRVLIYALPTGAPRVARLLSMKL 319
           + S    L   R     RR  +++R+    N  +  +TR+   ALP   P     LS++ 
Sbjct: 16  ETSTKGALVPKRPSTRRRRYLMKIRMQEWENVKLTAATRMESAALPETLPTSD--LSIRT 73

Query: 320 PALPYYSQHEEFDENNDHSIK---LVDTNQYI 348
           P  P Y QH     + D   +   +VD ++Y+
Sbjct: 74  PRKPRYFQHRRHPNDRDFFSRFRSVVDDDEYL 105


>SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)
          Length = 273

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 134 AEIKCFYGAADGSVGIITYEETTLSSNCLVEGRGLGSVVCLGWFYSNANLH 184
           A IK  +    G   I   E+T   SNC+    G GSV+   +F ++ +LH
Sbjct: 90  ASIKKMHQKRCGFPDIEEDEDTRTHSNCIYPFDGQGSVLAHAFFPTDGSLH 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,514,699
Number of Sequences: 59808
Number of extensions: 446851
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 6
length of query: 354
length of database: 16,821,457
effective HSP length: 83
effective length of query: 271
effective length of database: 11,857,393
effective search space: 3213353503
effective search space used: 3213353503
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)